Index | BIIGLE Server Documentation

A

AddAbundanceReportType — Class in namespace [Global Namespace]
AddImageCocoReportType — Class in namespace [Global Namespace]
AddImageIfdoReportType — Class in namespace [Global Namespace]
AddLocationReportTypes — Class in namespace [Global Namespace]
AddReportsReadyAtColumn — Class in namespace [Global Namespace]
AddVideoAnnotationReportType — Class in namespace [Global Namespace]
AddVideoLabelReportType — Class in namespace [Global Namespace]
Annotation — Class in namespace Biigle: An image annotation is a region of an image that can be labeled by the users.
AnnotationLabel — Class in namespace Biigle
$ AnnotationLabel#annotation_id — Property in class AnnotationLabel
AnnotationLabel::annotation() — Method in class AnnotationLabel: The annotation, this annotation label belongs to.
AnnotationSession — Class in namespace Biigle: An annotation session groups multiple annotations of a volume based on their creation date.
$ AnnotationSession#appends — Property in class AnnotationSession: The accessors to append to the model's array form.
AnnotationSession::annotations() — Method in class AnnotationSession: Get a query for all annotations that belong to this session.
AnnotationSession::allowsAccess() — Method in class AnnotationSession: Check if the given user is allowed to access the annotation if this annotation session is active.
Announcement — Class in namespace Biigle: Announcements are broadcasts from the application administrators that should reach all users of the instance.
ApiToken — Class in namespace Biigle
Apidoc — Class in namespace Biigle\Console\Commands
Annotation — Class in namespace Biigle\Contracts: An annotation model.
AnnotationLabelAttached — Class in namespace Biigle\Events
$ ObjectTrackingFailed#annotation — Property in class ObjectTrackingFailed: The video annotation that finished tracking.
$ ObjectTrackingSucceeded#annotation — Property in class ObjectTrackingSucceeded: The video annotation that finished tracking.
AnnotationSessionController — Class in namespace Biigle\Http\Controllers\Api
AnnotationController — Class in namespace Biigle\Http\Controllers\Api\Annotations\Filters
AnnotationUserController — Class in namespace Biigle\Http\Controllers\Api\Annotations\Filters
AnnouncementController — Class in namespace Biigle\Http\Controllers\Api
ApiTokenController — Class in namespace Biigle\Http\Controllers\Api
ProjectLabelTreeController::available() — Method in class ProjectLabelTreeController: Display all label trees that can be used by the specified project.
ProjectUserController::attach() — Method in class ProjectUserController: Adds a new user to the specified project.
ProjectVolumeController::attach() — Method in class ProjectVolumeController: Attaches the existing specified volume to the existing specified project.
UserRegistrationController::accept() — Method in class UserRegistrationController: Approves a user sign up.
AnnotationLabelController — Class in namespace Biigle\Http\Controllers\Api\Volumes\Filters
AnyFileLabelController — Class in namespace Biigle\Http\Controllers\Api\Volumes\Filters
LoginController::attemptLogin() — Method in class LoginController: Attempt to log the user into the application.
AnnouncementsController — Class in namespace Biigle\Http\Controllers\Views\Admin
AnnotationToolController — Class in namespace Biigle\Http\Controllers\Views\Annotations
DashboardController::annotationsActivityItems() — Method in class DashboardController: Get the most recently annotated images of a user.
SettingsController::account() — Method in class SettingsController: Shows the account settings.
SettingsController::authentication() — Method in class SettingsController: Shows the authentication settings.
Authenticate — Class in namespace Biigle\Http\Middleware
AuthenticateRegister — Class in namespace Biigle\Http\Middleware
$ VerifyCsrfToken#addHttpCookie — Property in class VerifyCsrfToken: Indicates whether the XSRF-TOKEN cookie should be set on the response.
AttachProjectUser — Class in namespace Biigle\Http\Requests
AttachProjectUser::authorize() — Method in class AttachProjectUser: Determine if the user is authorized to make this request.
CloneVolume::authorize() — Method in class CloneVolume: Determine if the user is authorized to make this request.
$ DestroyAnnotationSession#annotationSession — Property in class DestroyAnnotationSession: The annotation session that should be deleted.
DestroyAnnotationSession::authorize() — Method in class DestroyAnnotationSession: Determine if the user is authorized to make this request.
DestroyLabel::authorize() — Method in class DestroyLabel: Determine if the user is authorized to make this request.
DestroyLabelTree::authorize() — Method in class DestroyLabelTree: Determine if the user is authorized to make this request.
DestroyLabelTreeUser::authorize() — Method in class DestroyLabelTreeUser: Determine if the user is authorized to make this request.
DestroyLabelTreeVersion::authorize() — Method in class DestroyLabelTreeVersion: Determine if the user is authorized to make this request.
DestroyOwnUser::authorize() — Method in class DestroyOwnUser: Determine if the user is authorized to make this request.
DestroyPinnedProject::authorize() — Method in class DestroyPinnedProject: Determine if the user is authorized to make this request.
DestroyProjectUser::authorize() — Method in class DestroyProjectUser: Determine if the user is authorized to make this request.
DestroyUser::authorize() — Method in class DestroyUser: Determine if the user is authorized to make this request.
$ DestroyVideoAnnotationLabel#annotationLabel — Property in class DestroyVideoAnnotationLabel: The annotation label that should be deleted
DestroyVideoAnnotationLabel::authorize() — Method in class DestroyVideoAnnotationLabel: Determine if the user is authorized to make this request.
DestroyVolumeFile::authorize() — Method in class DestroyVolumeFile: Determine if the user is authorized to make this request.
JoinProjectInvitation::authorize() — Method in class JoinProjectInvitation: Determine if the user is authorized to make this request.
LinkVideoAnnotation::authorize() — Method in class LinkVideoAnnotation: Determine if the user is authorized to make this request.
$ SplitVideoAnnotation#annotation — Property in class SplitVideoAnnotation: The annotation that should be split.
SplitVideoAnnotation::authorize() — Method in class SplitVideoAnnotation: Determine if the user is authorized to make this request.
StoreAnnotationSession::authorize() — Method in class StoreAnnotationSession: Determine if the user is authorized to make this request.
StoreAnnouncement::authorize() — Method in class StoreAnnouncement: Determine if the user is authorized to make this request.
StoreFederatedSearchInstance::authorize() — Method in class StoreFederatedSearchInstance: Determine if the user is authorized to make this request.
StoreImageAnnotation::authorize() — Method in class StoreImageAnnotation: Determine if the user is authorized to make this request.
$ StoreImageAnnotationLabel#annotation — Property in class StoreImageAnnotationLabel: The annotation to which the label should be attached.
StoreImageAnnotationLabel::authorize() — Method in class StoreImageAnnotationLabel: Determine if the user is authorized to make this request.
StoreImageAnnotations::authorize() — Method in class StoreImageAnnotations: Determine if the user is authorized to make this request.
StoreLabel::authorize() — Method in class StoreLabel: Determine if the user is authorized to make this request.
StoreLabelTree::authorize() — Method in class StoreLabelTree: Determine if the user is authorized to make this request.
StoreLabelTreeAuthorizedProject::authorize() — Method in class StoreLabelTreeAuthorizedProject: Determine if the user is authorized to make this request.
StoreLabelTreeMerge::authorize() — Method in class StoreLabelTreeMerge: Determine if the user is authorized to make this request.
StoreLabelTreeUser::authorize() — Method in class StoreLabelTreeUser: Determine if the user is authorized to make this request.
StoreLabelTreeVersion::authorize() — Method in class StoreLabelTreeVersion: Determine if the user is authorized to make this request.
StorePendingVolume::authorize() — Method in class StorePendingVolume: Determine if the user is authorized to make this request.
StorePendingVolumeImport::authorize() — Method in class StorePendingVolumeImport: Determine if the user is authorized to make this request.
StorePinnedProject::authorize() — Method in class StorePinnedProject: Determine if the user is authorized to make this request.
StoreProject::authorize() — Method in class StoreProject: Determine if the user is authorized to make this request.
StoreProjectInvitation::authorize() — Method in class StoreProjectInvitation: Determine if the user is authorized to make this request.
StoreProjectLabelTree::authorize() — Method in class StoreProjectLabelTree: Determine if the user is authorized to make this request.
StoreUser::authorize() — Method in class StoreUser: Determine if the user is authorized to make this request.
StoreVideoAnnotation::authorize() — Method in class StoreVideoAnnotation: Determine if the user is authorized to make this request.
StoreVideoAnnotation::annotationContained() — Method in class StoreVideoAnnotation: Check if the point or circle annotation is fully contained by the video.
$ StoreVideoAnnotationLabel#annotation — Property in class StoreVideoAnnotationLabel: The annotation to which the label should be attached.
StoreVideoAnnotationLabel::authorize() — Method in class StoreVideoAnnotationLabel: Determine if the user is authorized to make this request.
StoreVolume::authorize() — Method in class StoreVolume: Determine if the user is authorized to make this request.
StoreVolumeFile::authorize() — Method in class StoreVolumeFile: Determine if the user is authorized to make this request.
StoreVolumeFileLabel::authorize() — Method in class StoreVolumeFileLabel: Determine if the user is authorized to make this request.
StoreVolumeMetadata::authorize() — Method in class StoreVolumeMetadata: Determine if the user is authorized to make this request.
$ UpdateAnnotationSession#annotationSession — Property in class UpdateAnnotationSession: The annotation session that should be updated.
UpdateAnnotationSession::authorize() — Method in class UpdateAnnotationSession: Determine if the user is authorized to make this request.
UpdateFederatedSearchInstance::authorize() — Method in class UpdateFederatedSearchInstance: Determine if the user is authorized to make this request.
UpdateLabel::authorize() — Method in class UpdateLabel: Determine if the user is authorized to make this request.
UpdateLabelTree::authorize() — Method in class UpdateLabelTree: Determine if the user is authorized to make this request.
UpdateLabelTreeUser::authorize() — Method in class UpdateLabelTreeUser: Determine if the user is authorized to make this request.
UpdateLabelTreeVersion::authorize() — Method in class UpdateLabelTreeVersion: Determine if the user is authorized to make this request.
UpdateOwnUser::authorize() — Method in class UpdateOwnUser: Determine if the user is authorized to make this request.
UpdatePendingVolume::authorize() — Method in class UpdatePendingVolume: Determine if the user is authorized to make this request.
UpdatePendingVolumeAnnotationLabels::authorize() — Method in class UpdatePendingVolumeAnnotationLabels: Determine if the user is authorized to make this request.
UpdatePendingVolumeFileLabels::authorize() — Method in class UpdatePendingVolumeFileLabels: Determine if the user is authorized to make this request.
UpdatePendingVolumeLabelMap::authorize() — Method in class UpdatePendingVolumeLabelMap: Determine if the user is authorized to make this request.
UpdatePendingVolumeUserMap::authorize() — Method in class UpdatePendingVolumeUserMap: Determine if the user is authorized to make this request.
UpdateProject::authorize() — Method in class UpdateProject: Determine if the user is authorized to make this request.
UpdateProjectUser::authorize() — Method in class UpdateProjectUser: Determine if the user is authorized to make this request.
UpdateUser::authorize() — Method in class UpdateUser: Determine if the user is authorized to make this request.
$ UpdateUserSettings#additionalRules — Property in class UpdateUserSettings: Additional validation rules that can be added during runtime.
UpdateUserSettings::addRule() — Method in class UpdateUserSettings: Add a new settings validation rule.
UpdateUserSettings::authorize() — Method in class UpdateUserSettings: Determine if the user is authorized to make this request.
$ UpdateVideoAnnotation#annotation — Property in class UpdateVideoAnnotation: The annotation that should be updated
UpdateVideoAnnotation::authorize() — Method in class UpdateVideoAnnotation: Determine if the user is authorized to make this request.
UpdateVolume::authorize() — Method in class UpdateVolume: Determine if the user is authorized to make this request.
Image::annotations() — Method in class Image: The annotations on this image.
ImageAnnotationLabel::annotation() — Method in class ImageAnnotationLabel: The annotation, this annotation label belongs to.
$ TrackObject#annotation — Property in class TrackObject: The annotation that defines the initial object to track.
LabelTree::addMember() — Method in class LabelTree: Add a new member with a certain role.
LabelTree::authorizedProjects() — Method in class LabelTree: The projects that are authorized to use this private label tree.
AnanasServiceProvider — Class in namespace Biigle\Modules\Ananas
AnnotationAssistanceRequest — Class in namespace Biigle\Modules\Ananas: With an annotation assistance request a BIIGLE user can consult some externa person for the label of a specific annotation.
AnnotationAssistanceRequest::annotation() — Method in class AnnotationAssistanceRequest: The annotation to which the assistance request belongs.
AnnotationAssistanceRequestFactory — Class in namespace Biigle\Modules\Ananas\Database\Factories
AnnotationAssistanceRequestController — Class in namespace Biigle\Modules\Ananas\Http\Controllers\Api
AnnotationAssistanceRequestController — Class in namespace Biigle\Modules\Ananas\Http\Controllers\Views
$ StoreAnnotationAssistanceRequest#annotation — Property in class StoreAnnotationAssistanceRequest: The annotation to create the request for.
StoreAnnotationAssistanceRequest::authorize() — Method in class StoreAnnotationAssistanceRequest: Determine if the user is authorized to make this request.
$ UpdateAnnotationAssistanceRequest#ananas — Property in class UpdateAnnotationAssistanceRequest: The request to update.
UpdateAnnotationAssistanceRequest::authorize() — Method in class UpdateAnnotationAssistanceRequest: Determine if the user is authorized to make this request.
AnnotationAssistanceRequest — Class in namespace Biigle\Modules\Ananas\Notifications
AnnotationAssistanceResponse — Class in namespace Biigle\Modules\Ananas\Notifications
AnnotationAssistanceRequestObserver — Class in namespace Biigle\Modules\Ananas\Observers
AnnotationAssistanceRequestPolicy — Class in namespace Biigle\Modules\Ananas\Policies
AnnotationAssistanceRequestPolicy::access() — Method in class AnnotationAssistanceRequestPolicy: Determine if the given assistance request can be accessed by the user.
StoreColorSortSequence::authorize() — Method in class StoreColorSortSequence: Determine if the user is authorized to make this request.
AnnotationCatalogController — Class in namespace Biigle\Modules\Largo\Http\Controllers\Views\LabelTrees
IndexProjectAnnotationsSimilarity::authorize() — Method in class IndexProjectAnnotationsSimilarity: Determine if the user is authorized to make this request.
IndexVolumeAnnotationsSimilarity::authorize() — Method in class IndexVolumeAnnotationsSimilarity: Determine if the user is authorized to make this request.
StoreLargoSession::authorize() — Method in class StoreLargoSession: Determine if the user is authorized to make this request.
StoreProjectLargoSession::authorize() — Method in class StoreProjectLargoSession: Determine if the user is authorized to make this request.
StoreVolumeLargoSession::authorize() — Method in class StoreVolumeLargoSession: Determine if the user is authorized to make this request.
ApplyLargoSession — Class in namespace Biigle\Modules\Largo\Jobs
ApplyLargoSession::applyDismissedLabels() — Method in class ApplyLargoSession: Detach annotation labels that were dismissed in a Largo session.
ApplyLargoSession::applyChangedLabels() — Method in class ApplyLargoSession: Attach annotation labels that were chosen in a Largo session.
$ RemoveAnnotationPatches#annotationIds — Property in class RemoveAnnotationPatches: Map of the annotation ID to the image/video UUID of the annotation whose patch should be removed.
AttachLabelListener — Class in namespace Biigle\Modules\Largo\Listeners
AnnotationObserver — Class in namespace Biigle\Modules\Largo\Observers
ComputeImage::authorize() — Method in class ComputeImage: Determine if the user is authorized to make this request.
ComputeVolume::authorize() — Method in class ComputeVolume: Determine if the user is authorized to make this request.
Image::accessLaserpointsArray() — Method in class Image: Get an attribute from the laser points array.
AnnotationCandidate — Class in namespace Biigle\Modules\Maia
AnnotationCandidate::annotation() — Method in class AnnotationCandidate: The annotation that was (maybe) created based on this candidate.
AnnotationCandidateFeatureVector — Class in namespace Biigle\Modules\Maia
$ MigratePatchStorage#acDisk — Property in class MigratePatchStorage: MAIA annotation candidate patch storage disk.
AnnotationCandidateFactory — Class in namespace Biigle\Modules\Maia\Database\Factories
AnnotationCandidateFeatureVectorFactory — Class in namespace Biigle\Modules\Maia\Database\Factories
AnnotationCandidateController — Class in namespace Biigle\Modules\Maia\Http\Controllers\Api
AreaKnowledgeTransferVolumeController — Class in namespace Biigle\Modules\Maia\Http\Controllers\Api
ContinueMaiaJob::authorize() — Method in class ContinueMaiaJob: Determine if the user is authorized to make this request.
DestroyMaiaJob::authorize() — Method in class DestroyMaiaJob: Determine if the user is authorized to make this request.
StoreMaiaJob::authorize() — Method in class StoreMaiaJob: Determine if the user is authorized to make this request.
SubmitAnnotationCandidates::authorize() — Method in class SubmitAnnotationCandidates: Determine if the user is authorized to make this request.
UpdateAnnotationCandidate::authorize() — Method in class UpdateAnnotationCandidate: Determine if the user is authorized to make this request.
UpdateTrainingProposal::authorize() — Method in class UpdateTrainingProposal: Determine if the user is authorized to make this request.
$ DeleteAnnotationPatches#annotationCandidates — Property in class DeleteAnnotationPatches: The annotation candidates to delete, grouped by image ID.
MaiaJob::annotationCandidates() — Method in class MaiaJob: The annotation candidates of this MAIA job.
AnnotationCandidatePolicy — Class in namespace Biigle\Modules\Maia\Policies
AnnotationCandidatePolicy::access() — Method in class AnnotationCandidatePolicy: Determine if the given annotation candidate can be accessed by the user.
AnnotationCandidatePolicy::attachLabel() — Method in class AnnotationCandidatePolicy: Determine if the user can attach the given label to the given candidate.
MaiaJobPolicy::access() — Method in class MaiaJobPolicy: Determine if the given job can be accessed by the user.
TrainingProposalPolicy::access() — Method in class TrainingProposalPolicy: Determine if the given training proposal can be accessed by the user.
AreaKnowledgeTransferVolume — Class in namespace Biigle\Modules\Maia\Rules
$ Converter#acquisitionFormat — Property in class Converter
$ Converter#annotators — Property in class Converter
Converter::addAnnotations() — Method in class Converter
Converter::annotationClass() — Method in class Converter
AdminController — Class in namespace Biigle\Modules\Newsletter\Http\Controllers\Views
DestroyNewsletterSubscriber::authorize() — Method in class DestroyNewsletterSubscriber: Determine if the user is authorized to make this request.
StoreNewsletter::authorize() — Method in class StoreNewsletter: Determine if the user is authorized to make this request.
StoreNewsletterSubscriber::authorize() — Method in class StoreNewsletterSubscriber: Determine if the user is authorized to make this request.
UpdateNewsletter::authorize() — Method in class UpdateNewsletter: Determine if the user is authorized to make this request.
NewsletterPolicy::access() — Method in class NewsletterPolicy: Determine if the given user can access a newsletter.
StoreProjectReport::authorize() — Method in class StoreProjectReport: Determine if the user is authorized to make this request.
StoreVolumeReport::authorize() — Method in class StoreVolumeReport: Determine if the user is authorized to make this request.
ReportPolicy::access() — Method in class ReportPolicy: Determine if the given report can be accessed by the user.
AbundanceReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Projects\ImageAnnotations
AnnotationLocationReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Projects\ImageAnnotations
AnnotationReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Projects\ImageAnnotations
AreaReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Projects\ImageAnnotations
AbundanceReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Volumes\ImageAnnotations
AbundanceReportGenerator::aggregateChildLabels() — Method in class AbundanceReportGenerator: Aggregate the number of child labels to the number of the highest parent label and remove the child labels from the list.
AnnotationLocationReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Volumes\ImageAnnotations
AnnotationReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Volumes\ImageAnnotations
AreaReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Volumes\ImageAnnotations
$ VolumeReportGenerator#annotationSession — Property in class VolumeReportGenerator: Cache for the annotation session the report may be restricted to.
ShowPublicLabelTreeExport::authorize() — Method in class ShowPublicLabelTreeExport: Determine if the user is authorized to make this request.
Export::addIds() — Method in class Export: Add more model IDs to this export.
Export::addToZip() — Method in class Export: Add the file of this report to a zip.
ArchiveManager — Class in namespace Biigle\Modules\Sync\Support\Import
LabelTreeImport::attachLabelTreeMembers() — Method in class LabelTreeImport: Attach members to imported label trees.
ExtendUserDisk::authorize() — Method in class ExtendUserDisk: Determine if the user is authorized to make this request.
StoreUserDisk::authorize() — Method in class StoreUserDisk: Determine if the user is authorized to make this request.
UpdateUserDisk::authorize() — Method in class UpdateUserDisk: Determine if the user is authorized to make this request.
UserDiskPolicy::access() — Method in class UserDiskPolicy: Determine if the given disk can be accessed (i.e. used for new volumes) by the user.
UserDisksServiceProvider::addStorageConfigResolver() — Method in class UserDisksServiceProvider: Add the storage disk config resolver for 'disk-*' disks.
StorageRequestController::approve() — Method in class StorageRequestController: Approve a storage request
ApproveStorageRequest — Class in namespace Biigle\Modules\UserStorage\Http\Requests
ApproveStorageRequest::authorize() — Method in class ApproveStorageRequest: Determine if the user is authorized to make this request.
DestroyStorageRequestDirectory::authorize() — Method in class DestroyStorageRequestDirectory: Determine if the user is authorized to make this request.
DestroyStorageRequestFile::authorize() — Method in class DestroyStorageRequestFile: Determine if the user is authorized to make this request.
ExtendStorageRequest::authorize() — Method in class ExtendStorageRequest: Determine if the user is authorized to make this request.
RejectStorageRequest::authorize() — Method in class RejectStorageRequest: Determine if the user is authorized to make this request.
StoreStorageRequest::authorize() — Method in class StoreStorageRequest: Determine if the user is authorized to make this request.
StoreStorageRequestFile::authorize() — Method in class StoreStorageRequestFile: Determine if the user is authorized to make this request.
UpdateStorageRequest::authorize() — Method in class UpdateStorageRequest: Determine if the user is authorized to make this request.
ApproveStorageRequest — Class in namespace Biigle\Modules\UserStorage\Jobs
AssembleChunkedFile — Class in namespace Biigle\Modules\UserStorage\Jobs
StorageRequestPolicy::access() — Method in class StorageRequestPolicy: Determine if the given request can be accessed by the user.
StorageRequestPolicy::approve() — Method in class StorageRequestPolicy: Determine if the given user can approve the storage request.
$ StorageRequest#appends — Property in class StorageRequest: The accessors to append to the model's array form.
$ InAppNotification#action — Property in class InAppNotification: Label of the action link.
$ InAppNotification#actionLink — Property in class InAppNotification: Action link (URL).
$ PendingVolume#attributes — Property in class PendingVolume: Default values for attributes.
AnnotationLabelPolicy — Class in namespace Biigle\Policies
AnnotationPolicy — Class in namespace Biigle\Policies
AnnotationPolicy::access() — Method in class AnnotationPolicy: Determine if the user may access the given annotation.
AnnotationPolicy::attachLabel() — Method in class AnnotationPolicy: Determine if the user can attach the given label to the given annotation.
AnnouncementPolicy — Class in namespace Biigle\Policies
ApiTokenPolicy — Class in namespace Biigle\Policies
LabelTreePolicy::access() — Method in class LabelTreePolicy: Determine if the given label tree can be accessed by the user.
LabelTreePolicy::addMember() — Method in class LabelTreePolicy: Determine if the user can add members to the given label tree.
LabelTreeVersionPolicy::access() — Method in class LabelTreeVersionPolicy: Determine if the given label tree version can be accessed by the user.
PendingVolumePolicy::access() — Method in class PendingVolumePolicy: Determine if the given pending volume can be accessed by the user.
ProjectInvitationPolicy::access() — Method in class ProjectInvitationPolicy: Determine if the user can access the given invitation.
ProjectPolicy::access() — Method in class ProjectPolicy: Determine if the given project can be accessed by the user.
VolumeFilePolicy::access() — Method in class VolumeFilePolicy: Determine if the user can access the given file.
VolumeFilePolicy::addAnnotation() — Method in class VolumeFilePolicy: Determine if the user can add an annotation to given file.
VolumeFilePolicy::attachLabel() — Method in class VolumeFilePolicy: Determine if the user can attach the given label to the given file.
VolumePolicy::access() — Method in class VolumePolicy: Determine if the given volume can be accessed by the user.
Project::admins() — Method in class Project: All members of this project with the admin role.
Project::addUserId() — Method in class Project: Adds the user with the given role to this project.
Project::addVolumeId() — Method in class Project: Adds a volume to this project if it wasn't already.
Project::authorizedLabelTrees() — Method in class Project: The private label trees that authorized this project to use them.
$ ProjectInvitation#appends — Property in class ProjectInvitation: The accessors to append to the model's array form.
AppServiceProvider — Class in namespace Biigle\Providers
AuthServiceProvider — Class in namespace Biigle\Providers
Alert — Class in namespace Biigle\QueueAlert\Notifications
Role::admin() — Method in class Role
Role::adminId() — Method in class Role
ApiGuard — Class in namespace Biigle\Services\Auth
Annotation — Class in namespace Biigle\Services\MetadataParsing
$ FileMetadata#annotations — Property in class FileMetadata
FileMetadata::addAnnotation() — Method in class FileMetadata
FileMetadata::addFileLabel() — Method in class FileMetadata
VideoMetadata::addFrame() — Method in class VideoMetadata
VolumeMetadata::addFile() — Method in class VolumeMetadata
$ Modules#apidocPaths — Property in class Modules: Additional source paths to generate the API documentation from.
Modules::addMixin() — Method in class Modules
FilesystemManager::addConfigResolver() — Method in class FilesystemManager: Register a config resolver Closure.
User::apiTokens() — Method in class User: Api tokens of this user.
Video::annotations() — Method in class Video: The annotations that belong to this video.
VideoAnnotationLabel::annotation() — Method in class VideoAnnotationLabel: The video annotation, this annotation label belongs to.
Volume::annotationSessions() — Method in class Volume: The annotation sessions of this volume.
Volume::activeAnnotationSession() — Method in class Volume: The active annotation sessions of this volume (if any).
VolumeFile::annotations() — Method in class VolumeFile: The annotations that belong to this file.

B

Announcement::booted() — Method in class Announcement: The "booted" method of the model.
ObjectTrackingFailed::broadcastOn() — Method in class ObjectTrackingFailed: Get the channels the event should broadcast on.
ObjectTrackingFailed::broadcastWith() — Method in class ObjectTrackingFailed: Get the data to broadcast.
ObjectTrackingSucceeded::broadcastOn() — Method in class ObjectTrackingSucceeded: Get the channels the event should broadcast on.
ObjectTrackingSucceeded::broadcastWith() — Method in class ObjectTrackingSucceeded: Get the data to broadcast.
FileCache::batch() — Method in class FileCache: Perform a callback with the paths of many cached files. Use this to prevent pruning of the files while they are processed.
FileCache::batchOnce() — Method in class FileCache: Like batch but deletes the cached files afterwards (if they are not used somewhere else).
FileCache::batch() — Method in class FileCache: Perform a callback with the paths of many cached files. Use this to prevent pruning of the files while they are processed.
FileCache::batchOnce() — Method in class FileCache: Like batch but deletes the cached files afterwards (if they are not used somewhere else).
FileCacheServiceProvider::boot() — Method in class FileCacheServiceProvider: Bootstrap the application events.
FileCacheFake::batch() — Method in class FileCacheFake: Perform a callback with the paths of many cached files. Use this to prevent pruning of the files while they are processed.
FileCacheFake::batchOnce() — Method in class FileCacheFake: Like batch but deletes the cached files afterwards (if they are not used somewhere else).
VolumeFileLabelController::baseStore() — Method in class VolumeFileLabelController: Creates a new label for the specified file.
BrowserController — Class in namespace Biigle\Http\Controllers\Api\Volumes
$ UpdateFederatedSearchIndex#backoff — Property in class UpdateFederatedSearchIndex: Retry a failed job after 5 minutes.
AnanasServiceProvider::boot() — Method in class AnanasServiceProvider: Bootstrap the application events.
AnnotationAssistanceRequestPolicy::before() — Method in class AnnotationAssistanceRequestPolicy: Intercept all checks.
LSLoginServiceProvider::boot() — Method in class LSLoginServiceProvider: Bootstrap the application events.
ColorSortServiceProvider::boot() — Method in class ColorSortServiceProvider: Bootstrap the application events.
DemoServiceProvider::boot() — Method in class DemoServiceProvider: Bootstrap the application events.
DenbiServiceServiceProvider::boot() — Method in class DenbiServiceServiceProvider: Bootstrap the application events.
GeoServiceProvider::boot() — Method in class GeoServiceProvider: Bootstrap the application events.
KpisServiceProvider::boot() — Method in class KpisServiceProvider: Bootstrap the application events.
LargoSessionFailed::broadcastOn() — Method in class LargoSessionFailed: Get the channels the event should broadcast on.
LargoSessionFailed::broadcastWith() — Method in class LargoSessionFailed: Get the data to broadcast.
LargoSessionSaved::broadcastOn() — Method in class LargoSessionSaved: Get the channels the event should broadcast on.
LargoSessionSaved::broadcastWith() — Method in class LargoSessionSaved: Get the data to broadcast.
LargoServiceProvider::boot() — Method in class LargoServiceProvider: Bootstrap the application events.
LaserpointsServiceProvider::boot() — Method in class LaserpointsServiceProvider: Bootstrap the application events.
EmbeddingAvailable::broadcastOn() — Method in class EmbeddingAvailable: Get the channels the event should broadcast on.
EmbeddingAvailable::broadcastWith() — Method in class EmbeddingAvailable: Get the data to broadcast.
EmbeddingFailed::broadcastOn() — Method in class EmbeddingFailed: Get the channels the event should broadcast on.
EmbeddingFailed::broadcastWith() — Method in class EmbeddingFailed: Get the data to broadcast.
MagicSamServiceProvider::boot() — Method in class MagicSamServiceProvider: Bootstrap the application events.
ObjectDetection::bundleTrainingProposals() — Method in class ObjectDetection: Bundle the training proposals to be sent to the GPU server.
ObjectDetection::buildImagesMap() — Method in class ObjectDetection: Build the map from image ID to path of the cached image file.
MaiaServiceProvider::boot() — Method in class MaiaServiceProvider: Bootstrap the application events.
AnnotationCandidatePolicy::before() — Method in class AnnotationCandidatePolicy: Intercept all checks.
MaiaJobPolicy::before() — Method in class MaiaJobPolicy: Intercept all checks.
TrainingProposalPolicy::before() — Method in class TrainingProposalPolicy: Intercept all checks.
MetadataIfdoServiceProvider::boot() — Method in class MetadataIfdoServiceProvider: Bootstrap the application events.
NewsletterServiceProvider::boot() — Method in class NewsletterServiceProvider: Bootstrap the application events.
VerifyEmail::buildMailMessage() — Method in class VerifyEmail: Get the verify email notification mail message for the given URL.
ReportPolicy::before() — Method in class ReportPolicy: Intercept all checks.
ReportsServiceProvider::boot() — Method in class ReportsServiceProvider: Bootstrap the application events.
BasicReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Projects\ImageAnnotations
BasicReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Projects\ImageLabels
BasicReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Volumes\ImageAnnotations
BasicReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Volumes\ImageLabels
SyncServiceProvider::boot() — Method in class SyncServiceProvider: Bootstrap the application events.
UserDiskPolicy::before() — Method in class UserDiskPolicy: Intercept all checks.
UserDisksServiceProvider::boot() — Method in class UserDisksServiceProvider: Bootstrap the application events.
StorageRequestPolicy::before() — Method in class StorageRequestPolicy: Intercept all checks.
StorageRequest::booted() — Method in class StorageRequest: The "booted" method of the model.
$ ChunkedFileStreamPump#buffer — Property in class ChunkedFileStreamPump
UserStorageServiceProvider::boot() — Method in class UserStorageServiceProvider: Bootstrap the application events.
PendingVolume::booted() — Method in class PendingVolume
AnnotationPolicy::before() — Method in class AnnotationPolicy: Intercept all checks.
LabelTreePolicy::before() — Method in class LabelTreePolicy: Intercept all checks.
LabelTreeVersionPolicy::before() — Method in class LabelTreeVersionPolicy: Intercept all checks.
PendingVolumePolicy::before() — Method in class PendingVolumePolicy: Intercept all checks.
ProjectInvitationPolicy::before() — Method in class ProjectInvitationPolicy: Intercept all checks.
ProjectPolicy::before() — Method in class ProjectPolicy: Intercept all checks.
VolumeFilePolicy::before() — Method in class VolumeFilePolicy: Intercept all checks.
VolumePolicy::before() — Method in class VolumePolicy: Intercept all checks.
AppServiceProvider::boot() — Method in class AppServiceProvider: Bootstrap any application services.
AuthServiceProvider::boot() — Method in class AuthServiceProvider: Register any authentication / authorization services.
BroadcastServiceProvider — Class in namespace Biigle\Providers
BroadcastServiceProvider::boot() — Method in class BroadcastServiceProvider: Bootstrap any application services.
EventServiceProvider::boot() — Method in class EventServiceProvider: Register any events for your application.
RouteServiceProvider::boot() — Method in class RouteServiceProvider: Define your route model bindings, pattern filters, etc.
QueueAlertServiceProvider::boot() — Method in class QueueAlertServiceProvider: Bootstrap the application events.
Volume::booted() — Method in class Volume

C

$ Annotation#casts — Property in class Annotation: The attributes that should be casted to native types.
$ Annotation#created_at — Property in class Annotation
$ AnnotationLabel#casts — Property in class AnnotationLabel: The attributes that should be casted to native types.
$ AnnotationSession#casts — Property in class AnnotationSession: The attributes that should be casted to native types.
$ Announcement#casts — Property in class Announcement: The attributes that should be casted to native types.
Kernel::commands() — Method in class Kernel: Register the Closure based commands for the application.
LabelSourceAdapterContract::create() — Method in class LabelSourceAdapterContract: Create the label (or labels) from the label source based on an API request.
$ FederatedSearchInstance#casts — Property in class FederatedSearchInstance: The attributes that should be casted to native types.
FederatedSearchInstance::createLocalToken() — Method in class FederatedSearchInstance: Create a new local token and store the sha256 hash in the attribute of this model.
$ FederatedSearchModel#casts — Property in class FederatedSearchModel: The attributes that should be casted to native types.
FileCache::clear() — Method in class FileCache: Delete all unused cached files.
$ FileCache#config — Property in class FileCache: File cache configuration.
$ FileCache#client — Property in class FileCache: Guzzle HTTP client to use
FileCache::clear() — Method in class FileCache: Delete all unused cached files.
FileCache::cacheFromResource() — Method in class FileCache: Store the file from the given resource to a cached file.
ClearFileCache — Class in namespace Biigle\FileCache\Listeners
FileCacheFake::clear() — Method in class FileCacheFake: Delete all unused cached files.
Controller — Class in namespace Biigle\Http\Controllers\Api
VolumeController::clone() — Method in class VolumeController: Clones volume to destination project.
LoginController::credentials() — Method in class LoginController: Get the needed authorization credentials from the request.
RegisterController::create() — Method in class RegisterController: Create a new user instance after a valid registration.
ResetPasswordController::credentials() — Method in class ResetPasswordController: Get the password reset credentials from the request.
Controller — Class in namespace Biigle\Http\Controllers
AnnouncementsController::create() — Method in class AnnouncementsController: Shows the admin new announcement page.
Controller — Class in namespace Biigle\Http\Controllers\Views
LabelTreeVersionsController::create() — Method in class LabelTreeVersionsController: Show the create label tree version page.
LabelTreesController::create() — Method in class LabelTreesController: Show the create label tree page.
ProjectsController::create() — Method in class ProjectsController: Shows the create project page.
VolumeCloneController::clone() — Method in class VolumeCloneController: Shows the volume clone page.
VolumeController::create() — Method in class VolumeController: Shows the create volume page.
CloneVolume — Class in namespace Biigle\Http\Requests
$ StoreLabelTreeMerge#create — Property in class StoreLabelTreeMerge: Flat array of labels to create.
UpdateFederatedSearchInstance::checkRemoteConnection() — Method in class UpdateFederatedSearchInstance: Check the connection to the remote instance.
$ Image#casts — Property in class Image: The attributes that should be casted to native types.
$ ImageAnnotation#casts — Property in class ImageAnnotation: The attributes that should be casted to native types.
$ ImageAnnotationLabel#casts — Property in class ImageAnnotationLabel: The attributes that should be casted to native types.
CloneImagesOrVideos — Class in namespace Biigle\Jobs
$ CloneImagesOrVideos#copy — Property in class CloneImagesOrVideos
$ CloneImagesOrVideos#cloneAnnotations — Property in class CloneImagesOrVideos: Boolean for cloning annotation labels.
$ CloneImagesOrVideos#cloneFileLabels — Property in class CloneImagesOrVideos: Boolean for cloning file labels.
CloneImagesOrVideos::copyImages() — Method in class CloneImagesOrVideos: Copies (selected) images from given volume to volume copy.
CloneImagesOrVideos::copyImageAnnotation() — Method in class CloneImagesOrVideos: Copies (selected) image annotation and annotation labels from volume to volume copy.
CloneImagesOrVideos::copyImageLabels() — Method in class CloneImagesOrVideos: Copies (selected) image labels from given volume to volume copy.
CloneImagesOrVideos::copyVideos() — Method in class CloneImagesOrVideos: Copies (selected) videos from given volume to volume copy.
CloneImagesOrVideos::copyVideoAnnotation() — Method in class CloneImagesOrVideos: Copies (selected) video annotations and annotation labels from given volume to volume copy.
CloneImagesOrVideos::copyVideoLabels() — Method in class CloneImagesOrVideos: Copies (selected) video labels from volume to volume copy.
CloneImagesOrVideos::copyMetadataFile() — Method in class CloneImagesOrVideos
CreateNewImagesOrVideos — Class in namespace Biigle\Jobs
CreateNewImagesOrVideos::createFiles() — Method in class CreateNewImagesOrVideos: Create an array to be inserted as new image or video models.
ProcessNewImage::collectMetadata() — Method in class ProcessNewImage: Collect image metadata.
TrackObject::createInputJson() — Method in class TrackObject: Create the JSON file that is the input for the object tracking script.
UpdateFederatedSearchIndex::cleanupDanglingModels() — Method in class UpdateFederatedSearchIndex: Delete all federated search models of the current instance that are not accessible by any user.
$ Label#casts — Property in class Label: The attributes that should be casted to native types.
Label::children() — Method in class Label: The child labels of this label if they are ordered in a tree-like structue.
Label::canBeDeleted() — Method in class Label: Determines if the label can be deleted.
$ LabelTree#casts — Property in class LabelTree: The attributes that should be casted to native types.
LabelTree::canBeDeleted() — Method in class LabelTree: Determines if the label tree can be safely deleted.
$ LabelTreeVersion#casts — Property in class LabelTreeVersion: The attributes that should be casted to native types.
CleanupImageThumbnails — Class in namespace Biigle\Listeners
CleanupImageTiles — Class in namespace Biigle\Listeners
CleanupVideoThumbnails — Class in namespace Biigle\Listeners
CreateRedisLogger — Class in namespace Biigle\Logging
$ LogManager#channel — Property in class LogManager: The default logging channel.
$ AnnotationAssistanceRequest#casts — Property in class AnnotationAssistanceRequest: The attributes that should be casted to native types.
AnnotationAssistanceRequestController::create() — Method in class AnnotationAssistanceRequestController: Create a new annotation assistance request.
AnnotationAssistanceRequestObserver::created() — Method in class AnnotationAssistanceRequestObserver: Handle the event of creatinga new assistance request.
LSLoginController::callback() — Method in class LSLoginController: Handle the authentication response
ColorSortServiceProvider — Class in namespace Biigle\Modules\ColorSort
ComputeNewSequence — Class in namespace Biigle\Modules\ColorSort\Jobs
$ Sequence#casts — Property in class Sequence: The attributes that should be casted to native types.
Config — Class in namespace Biigle\Modules\Demo\Console\Commands
CountUniqueUser — Class in namespace Biigle\Modules\Kpis\Console\Commands
CountUser — Class in namespace Biigle\Modules\Kpis\Console\Commands
Config — Class in namespace Biigle\Modules\Largo\Console\Commands
$ StoreLargoSession#changedImageAnnotations — Property in class StoreLargoSession: The changed_image_annotations request attribute.
$ StoreLargoSession#changedVideoAnnotations — Property in class StoreLargoSession: The changed_video_annotations request attribute.
$ ImageAnnotationLabelFeatureVector#casts — Property in class ImageAnnotationLabelFeatureVector: The attributes that should be casted to native types.
$ ApplyLargoSession#changedImageAnnotations — Property in class ApplyLargoSession: Array of all changed image annotation IDs for each label.
$ ApplyLargoSession#changedVideoAnnotations — Property in class ApplyLargoSession: Array of all changed video annotation IDs for each label.
CopyAnnotationFeatureVector — Class in namespace Biigle\Modules\Largo\Jobs
CopyImageAnnotationFeatureVector — Class in namespace Biigle\Modules\Largo\Jobs
CopyVideoAnnotationFeatureVector — Class in namespace Biigle\Modules\Largo\Jobs
ProcessAnnotatedFile::createSvgs() — Method in class ProcessAnnotatedFile: Generate and upload annotation SVGs for the file.
ProcessAnnotatedFile::createSvg() — Method in class ProcessAnnotatedFile: Generate and upload an SVG for the annotation.
ProcessAnnotatedFile::computeRotationAngle() — Method in class ProcessAnnotatedFile: Computes angle between two vectors
$ RemoveAnnotationPatches#chunkSize — Property in class RemoveAnnotationPatches: Number of annotations to start chunking of this job.
$ VideoAnnotationLabelFeatureVector#casts — Property in class VideoAnnotationLabelFeatureVector: The attributes that should be casted to native types.
Config — Class in namespace Biigle\Modules\Laserpoints\Console\Commands
LaserpointsController::computeImage() — Method in class LaserpointsController: Compute distance between laser points for an image.
LaserpointsController::computeVolume() — Method in class LaserpointsController: Compute distance between laser points for a volume.
ComputeImage — Class in namespace Biigle\Modules\Laserpoints\Http\Requests
ComputeVolume — Class in namespace Biigle\Modules\Laserpoints\Http\Requests
Image::convert() — Method in class Image: Converts a regular Biigle image to a Laserpoints image.
Volume::convert() — Method in class Volume: Converts a regular Biigle volume to a Laserpoints volume.
$ AnnotationCandidateFeatureVector#casts — Property in class AnnotationCandidateFeatureVector: The attributes that should be casted to native types.
ContinueMaiaJob — Class in namespace Biigle\Modules\Maia\Http\Requests
$ UpdateAnnotationCandidate#candidate — Property in class UpdateAnnotationCandidate: The annotation candidate to update
ConvertAnnotationCandidates — Class in namespace Biigle\Modules\Maia\Jobs
DetectionJob::cleanup() — Method in class DetectionJob: Clean up temporary data produced by this job.
DetectionJob::createTmpDir() — Method in class DetectionJob: Create the temporary directory for this request.
DetectionJob::createMaiaAnnotations() — Method in class DetectionJob: Create MAIA annotations from the training proposals.
DetectionJob::createMaiaAnnotation() — Method in class DetectionJob: Create an insert array for a MAIA annotation.
NoveltyDetection::createInputJson() — Method in class NoveltyDetection: Create the JSON file that is the input to the novelty detection script.
ObjectDetection::createDatasetJson() — Method in class ObjectDetection: Create the JSON file that is the input to the dataset generation script.
ObjectDetection::createTrainingJson() — Method in class ObjectDetection: Create the JSON file that is the input to the training script.
ObjectDetection::createInferenceJson() — Method in class ObjectDetection: Create the JSON file that is the input to the inference script.
PrepareAnnotationsJob::convertAnnotations() — Method in class PrepareAnnotationsJob: Convert all matching annotations to training proposals.
PrepareAnnotationsJob::convertAnnotationChunk() — Method in class PrepareAnnotationsJob: Convert a chunk of annotations to training proposals.
PrepareAnnotationsJob::convertAnnotationPointsToCircle() — Method in class PrepareAnnotationsJob: Convert the points of an annotation to the points of a circle.
PrepareAnnotationsJob::convertPolygonToCirlce() — Method in class PrepareAnnotationsJob: Determine the points of a circle from the points of a polygon.
$ MaiaAnnotation#casts — Property in class MaiaAnnotation: The attributes that should be casted to native types.
$ MaiaJob#casts — Property in class MaiaJob: The attributes that should be casted to native types.
$ TrainingProposal#casts — Property in class TrainingProposal: The attributes that should be casted to native types.
$ TrainingProposalFeatureVector#casts — Property in class TrainingProposalFeatureVector: The attributes that should be casted to native types.
Converter — Class in namespace Biigle\Modules\MetadataIfdo
Converter::convert() — Method in class Converter
RegisterControllerMixin::create() — Method in class RegisterControllerMixin: Handle a newly created user.
AdminController::create() — Method in class AdminController: Shows the create newsletter view.
NewsletterController::create() — Method in class NewsletterController: Creates a new newsletter subscriber
NewsletterController::created() — Method in class NewsletterController: Shows the created page.
$ Newsletter#casts — Property in class Newsletter: The attributes that should be casted to native types.
$ NewsletterSubscriber#casts — Property in class NewsletterSubscriber: The attributes that should be casted to native types.
NewsletterPolicy::create() — Method in class NewsletterPolicy: Determine if the given user can create a newsletter.
ReportObserver::creating() — Method in class ReportObserver: Fill the attributes that depend on the source.
$ Report#casts — Property in class Report: The attributes that should be casted to native types.
CsvFile — Class in namespace Biigle\Modules\Reports\Support
File::close() — Method in class File: Close the file.
CocoReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Projects\ImageAnnotations
CsvReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Projects\ImageAnnotations
CsvReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Projects\ImageLabels
CsvReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Projects\VideoAnnotations
CsvReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Projects\VideoLabels
AbundanceReportGenerator::createCsv() — Method in class AbundanceReportGenerator: Create a CSV file for a single sheet of the spreadsheet of this report.
AnnotationLocationReportGenerator::createNdJSON() — Method in class AnnotationLocationReportGenerator: Create the newline delimited GeoJSON file.
AreaReportGenerator::createCsv() — Method in class AreaReportGenerator: Create a CSV file for a single sheet of the spreadsheet of this report.
BasicReportGenerator::createCsv() — Method in class BasicReportGenerator: Create a CSV file for a single plot of this report.
CocoReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Volumes\ImageAnnotations
CocoReportGenerator::createCsv() — Method in class CocoReportGenerator: Create a CSV file for this report.
CsvReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Volumes\ImageAnnotations
CsvReportGenerator::createCsv() — Method in class CsvReportGenerator: Create a CSV file for this report.
ExtendedReportGenerator::createCsv() — Method in class ExtendedReportGenerator: Create a CSV file for a single sheet of the spreadsheet of this report.
FullReportGenerator::createCsv() — Method in class FullReportGenerator: Create a CSV file for a single sheet of the spreadsheet of this report.
ImageLocationReportGenerator::createNdJSON() — Method in class ImageLocationReportGenerator: Create the newline delimited GeoJSON file.
BasicReportGenerator::createCsv() — Method in class BasicReportGenerator: Create a CSV file for a single sheet of the spreadsheet of this report.
CsvReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Volumes\ImageLabels
CsvReportGenerator::createCsv() — Method in class CsvReportGenerator: Create a CSV file for this report.
ImageLocationReportGenerator::createNdJSON() — Method in class ImageLocationReportGenerator: Create the newline delimited GeoJSON file.
$ PythonScriptRunner#code — Property in class PythonScriptRunner: Exit code of the exec call.
CsvReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Volumes\VideoAnnotations
CsvReportGenerator::createCsv() — Method in class CsvReportGenerator: Create a CSV file for this report.
CsvReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Volumes\VideoLabels
CsvReportGenerator::createCsv() — Method in class CsvReportGenerator: Create a CSV file for this report.
Volume::convert() — Method in class Volume: Converts a regular Biigle volume to an export volume.
Controller — Class in namespace Biigle\Modules\Sync\Http\Controllers\Api\Export
Export::cleanUp() — Method in class Export: Clean up any temporary files.
ImageAnnotationExport::cleanUp() — Method in class ImageAnnotationExport: Clean up any temporary files.
ImageAnnotationLabelExport::cleanUp() — Method in class ImageAnnotationLabelExport: Clean up any temporary files.
ImageExport::cleanUp() — Method in class ImageExport: Clean up any temporary files.
ImageLabelExport::cleanUp() — Method in class ImageLabelExport: Clean up any temporary files.
PublicLabelExport::cleanUp() — Method in class PublicLabelExport: Clean up any temporary files.
VideoAnnotationExport::cleanUp() — Method in class VideoAnnotationExport: Clean up any temporary files.
VideoAnnotationLabelExport::cleanUp() — Method in class VideoAnnotationLabelExport: Clean up any temporary files.
VideoExport::cleanUp() — Method in class VideoExport: Clean up any temporary files.
VideoLabelExport::cleanUp() — Method in class VideoLabelExport: Clean up any temporary files.
Import::collectJson() — Method in class Import: Read a JSON file containing an array and wrap it in a Laravel collection.
CheckExpiredUserDisks — Class in namespace Biigle\Modules\UserDisks\Console\Commands
UserDiskPolicy::create() — Method in class UserDiskPolicy: Determine if the given user can create a new disk.
$ UserDisk#casts — Property in class UserDisk: The attributes that should be cast.
CheckExpiredStorageRequests — Class in namespace Biigle\Modules\UserStorage\Console\Commands
StorageRequestController::create() — Method in class StorageRequestController: Show the view to create a new storage request.
$ StoreStorageRequestFile#chunkOrFileExists — Property in class StoreStorageRequestFile
$ UpdateStorageRequest#chunkedFiles — Property in class UpdateStorageRequest: Chunked files of a stroage request.
$ DeleteStorageRequestFile#chunks — Property in class DeleteStorageRequestFile: Chunks of an uploaded file that was not assembled yet.
StorageRequestPolicy::create() — Method in class StorageRequestPolicy: Determine if the given user can create a new request.
$ StorageRequest#casts — Property in class StorageRequest: The attributes that should be cast.
$ StorageRequestFile#casts — Property in class StorageRequestFile: The attributes that should be cast.
ChunkedFileStreamPump — Class in namespace Biigle\Modules\UserStorage\Support: When invoked repeadetly, subsequently returns the content of storage request file chunks. This is meant to be used together with a \GuzzleHttp\Psr7\PumpStream.
$ ChunkedFileStreamPump#currentChunk — Property in class ChunkedFileStreamPump: Index of the current chunk to return for the stream.
User::convert() — Method in class User: Converts a regular user to an user storage user.
ProjectObserver::creating() — Method in class ProjectObserver: A project must not be created without having a creator.
ProjectObserver::created() — Method in class ProjectObserver: Handle actions for newly created projects.
VolumeObserver::creating() — Method in class VolumeObserver: A volume must not be created without having a creator.
$ PendingVolume#casts — Property in class PendingVolume: The attributes that should be cast.
AnnouncementPolicy::create() — Method in class AnnouncementPolicy: Determine whether the user can create announcements.
ApiTokenPolicy::create() — Method in class ApiTokenPolicy: Determine if the given user can create API tokens.
CachedPolicy — Class in namespace Biigle\Policies: A policy for caching the return values of the authorization rules during a request.
$ CachedPolicy#cache — Property in class CachedPolicy: The cache instance to use for caching policies.
FederatedSearchInstancePolicy::create() — Method in class FederatedSearchInstancePolicy: Determine whether the user can create instances.
LabelTreePolicy::create() — Method in class LabelTreePolicy: Determine if the given user can create label trees.
LabelTreePolicy::createLabel() — Method in class LabelTreePolicy: Determine if the user can add labels to the given label tree.
LabelTreeVersionPolicy::create() — Method in class LabelTreeVersionPolicy: Determine if the given user can create version of a label tree.
ProjectPolicy::create() — Method in class ProjectPolicy: Determine if the given user can create projects.
UserPolicy::create() — Method in class UserPolicy: Determine if the given user can create users.
Project::creator() — Method in class Project: The user that created this project. On creation this user is automatically added to the project's users with the 'admin' role by the ProjectObserver.
Project::changeRole() — Method in class Project: Changes the role of an existing user in this project.
$ ProjectInvitation#casts — Property in class ProjectInvitation: The attributes that should be casted to native types.
CheckQueues — Class in namespace Biigle\QueueAlert
$ CheckQueues#cache — Property in class CheckQueues: The cache manager instance.
CheckQueues::checkQueue() — Method in class CheckQueues: Check a single queue and send an alert if necessary.
$ Alert#connections — Property in class Alert: Queue connection name.
$ GreaterThan#compare — Property in class GreaterThan: The value to compare.
$ LessThan#compare — Property in class LessThan: The value to compare.
$ WormsAdapter#client — Property in class WormsAdapter: SOAP client for the WoRMS webservice.
WormsAdapter::create() — Method in class WormsAdapter: Create the label (or labels) from the label source based on an API request.
WormsAdapter::createSingleLabel() — Method in class WormsAdapter: Create (and save) a single label.
WormsAdapter::createRecursiveLabels() — Method in class WormsAdapter: Create (and save) a label and all WoRMS parents that don't already exist in the tree.
CsvParser — Class in namespace Biigle\Services\MetadataParsing
$ Modules#controllerMixins — Property in class Modules: The controller mixins of every module.
Modules::callControllerMixins() — Method in class Modules: Call all controller mixins registered for a certain controller.
Shape::circle() — Method in class Shape
Shape::circleId() — Method in class Shape
$ FilesystemManager#configResolvers — Property in class FilesystemManager: The registered config resolvers.
HasPointsAttribute::countDistinctCoordinates() — Method in class HasPointsAttribute: Counts number of distinct points
$ User#casts — Property in class User: The attributes that should be casted to native types.
User::checkCanBeDeleted() — Method in class User: Checks if the user can be deleted.
$ Video#casts — Property in class Video: The attributes that should be casted to native types.
$ VideoAnnotation#casts — Property in class VideoAnnotation: The attributes that should be casted to native types.
$ Volume#casts — Property in class Volume: The attributes that should be casted to native types.
Volume::creator() — Method in class Volume: The user that created the volume.
$ VolumeFileLabel#casts — Property in class VolumeFileLabel: The attributes that should be casted to native types.
CreateCopriaColorSortSequencesTable — Class in namespace [Global Namespace]
CreateGeoOverlaysTable — Class in namespace [Global Namespace]
CreateIndices — Class in namespace [Global Namespace]
CreateReportsTable — Class in namespace [Global Namespace]

D

AddAbundanceReportType::down() — Method in class AddAbundanceReportType: Reverse the migrations.
AddImageCocoReportType::down() — Method in class AddImageCocoReportType: Reverse the migrations.
AddImageIfdoReportType::down() — Method in class AddImageIfdoReportType: Reverse the migrations.
AddLocationReportTypes::down() — Method in class AddLocationReportTypes: Reverse the migrations.
AddReportsReadyAtColumn::down() — Method in class AddReportsReadyAtColumn: Reverse the migrations.
AddVideoAnnotationReportType::down() — Method in class AddVideoAnnotationReportType: Reverse the migrations.
AddVideoLabelReportType::down() — Method in class AddVideoLabelReportType: Reverse the migrations.
$ Apidoc#description — Property in class Apidoc: The console command description.
$ MigrateTiledImages#description — Property in class MigrateTiledImages: The console command description.
$ NewUser#description — Property in class NewUser: The console command description.
$ PruneNotifications#description — Property in class PruneNotifications: The console command description.
$ UpdateVideoMetadata#description — Property in class UpdateVideoMetadata: The console command description.
$ UpdateVideoMetadata#dryRun — Property in class UpdateVideoMetadata: Is this a dry run?
$ UpdateVolumeUrls#description — Property in class UpdateVolumeUrls: The console command description.
$ UpdateVolumeUrls#dryRun — Property in class UpdateVolumeUrls: Is this a dry run?
$ UpdateVolumeUrls#disks — Property in class UpdateVolumeUrls: Available storage disks.
$ ObjectTrackingFailed#deleteWhenMissingModels — Property in class ObjectTrackingFailed: Ignore this event if the annotation does not exist any more.
$ ObjectTrackingSucceeded#deleteWhenMissingModels — Property in class ObjectTrackingSucceeded: Ignore this event if the annotation does not exist any more.
$ Handler#dontFlash — Property in class Handler: A list of the inputs that are never flashed for validation exceptions.
$ PruneFileCache#description — Property in class PruneFileCache: The console command description.
FileCache::delete() — Method in class FileCache: Delete a cached file it it is not used.
AnnotationSessionController::destroy() — Method in class AnnotationSessionController: Removes the annotation session.
AnnouncementController::destroy() — Method in class AnnouncementController: Delete an announcement.
ApiTokenController::destroy() — Method in class ApiTokenController: Removes the specified API token.
FederatedSearchInstanceController::destroy() — Method in class FederatedSearchInstanceController: Disonnect a remote federated search instance.
ImageAnnotationController::destroy() — Method in class ImageAnnotationController: Removes the annotation.
ImageAnnotationLabelController::destroy() — Method in class ImageAnnotationLabelController: Deletes the specified annotation label.
ImageController::destroy() — Method in class ImageController: Delete an image.
LabelController::destroy() — Method in class LabelController: Delete a label.
LabelTreeAuthorizedProjectController::destroy() — Method in class LabelTreeAuthorizedProjectController: Remove authorization of a project to use a private label tree.
LabelTreeController::destroy() — Method in class LabelTreeController: Removes the specified label tree.
LabelTreeUserController::destroy() — Method in class LabelTreeUserController: Removes the specified member from the specified label tree.
LabelTreeVersionController::destroy() — Method in class LabelTreeVersionController: Removes the specified label tree version.
NotificationController::destroy() — Method in class NotificationController: Delete a read notification.
PendingVolumeController::destroy() — Method in class PendingVolumeController: Delete a pending volume
ProjectController::destroy() — Method in class ProjectController: Removes the specified project.
ProjectInvitationController::destroy() — Method in class ProjectInvitationController: Deletes a project invitation.
ProjectLabelTreeController::destroy() — Method in class ProjectLabelTreeController: Removes a label tree form the specified project.
ProjectUserController::destroy() — Method in class ProjectUserController: Removes a user form the specified project.
ProjectVolumeController::destroy() — Method in class ProjectVolumeController: Removes the specified volume from the specified project.
UserController::destroy() — Method in class UserController: Removes the specified user.
UserController::destroyOwn() — Method in class UserController: Removes the own user.
UserPinnedProjectController::destroy() — Method in class UserPinnedProjectController: Unpin a project.
VideoAnnotationController::destroy() — Method in class VideoAnnotationController: Removes a video annotation.
VideoAnnotationLabelController::destroy() — Method in class VideoAnnotationLabelController: Detach a label
VideoController::destroy() — Method in class VideoController: Delete a video.
VolumeFileLabelController::destroy() — Method in class VolumeFileLabelController: Deletes the specified file label.
MetadataController::destroy() — Method in class MetadataController: Delete a metadata file attached to a volume
UsersController::delete() — Method in class UsersController: Shows the admin delete user page.
DashboardController — Class in namespace Biigle\Http\Controllers\Views
ManualController::documentationArticle() — Method in class ManualController: Show a documentation article.
DestroyAnnotationSession — Class in namespace Biigle\Http\Requests
DestroyImage — Class in namespace Biigle\Http\Requests
DestroyLabel — Class in namespace Biigle\Http\Requests
DestroyLabelTree — Class in namespace Biigle\Http\Requests
DestroyLabelTreeUser — Class in namespace Biigle\Http\Requests
DestroyLabelTreeVersion — Class in namespace Biigle\Http\Requests
DestroyOwnUser — Class in namespace Biigle\Http\Requests
DestroyPinnedProject — Class in namespace Biigle\Http\Requests
DestroyProjectUser — Class in namespace Biigle\Http\Requests
DestroyUser — Class in namespace Biigle\Http\Requests
$ DestroyUser#destroyUser — Property in class DestroyUser: The user to delete.
DestroyVideo — Class in namespace Biigle\Http\Requests
DestroyVideoAnnotationLabel — Class in namespace Biigle\Http\Requests
DestroyVolumeFile — Class in namespace Biigle\Http\Requests
$ Ifdo#debug — Property in class Ifdo
$ CloneImagesOrVideos#deleteWhenMissingModels — Property in class CloneImagesOrVideos: Ignore this job if the project or volume does not exist any more.
DeleteVolume — Class in namespace Biigle\Jobs
$ ImportVolumeMetadata#deleteWhenMissingModels — Property in class ImportVolumeMetadata: Ignore this job if the pending volume does not exist any more.
$ MigrateTiledImage#disk — Property in class MigrateTiledImage: Name of the storage disk that holds the ZIP files of tiled images.
$ ProcessNewImage#deleteWhenMissingModels — Property in class ProcessNewImage: Ignore this job if the image does not exist any more.
$ ProcessNewVideo#deleteWhenMissingModels — Property in class ProcessNewVideo: Ignore this job if the video does not exist any more.
$ ProcessNewVolumeFiles#deleteWhenMissingModels — Property in class ProcessNewVolumeFiles: Ignore this job if the volume does not exist any more.
$ TileSingleImage#deleteWhenMissingModels — Property in class TileSingleImage: Ignore this job if the image does not exist any more.
$ TrackObject#deleteWhenMissingModels — Property in class TrackObject: Ignore this job if the annotation does not exist any more.
$ UpdateFederatedSearchIndex#deleteWhenMissingModels — Property in class UpdateFederatedSearchIndex: Ignore this job if the volume does not exist any more.
$ UpdateVolumeMetadata#deleteWhenMissingModels — Property in class UpdateVolumeMetadata: Ignore this job if the project or volume does not exist any more.
LabelTree::detachUnauthorizedProjects() — Method in class LabelTree: Detaches all projects that are not among the authorized projects.
$ Publish#description — Property in class Publish: The console command description.
AnnotationAssistanceRequestFactory::definition() — Method in class AnnotationAssistanceRequestFactory: Define the model's default state.
AnnotationAssistanceRequestController::destroy() — Method in class AnnotationAssistanceRequestController: Delete an annotation assistance request.
AnnotationAssistanceRequestPolicy::destroy() — Method in class AnnotationAssistanceRequestPolicy: Determine if the given assistance request can be deleted by the user.
LsloginIdFactory::definition() — Method in class LsloginIdFactory: Define the model's default state.
$ Publish#description — Property in class Publish: The console command description.
VolumeColorSortSequenceController::destroy() — Method in class VolumeColorSortSequenceController: Delete a color sort sequence.
$ ComputeNewSequence#deleteWhenMissingModels — Property in class ComputeNewSequence: Ignore this job if the annotation does not exist any more.
ImageObserver::deleted() — Method in class ImageObserver: Updates the color sort sequences containing the ID of the deleted image.
$ Config#description — Property in class Config: The console command description.
DemoServiceProvider — Class in namespace Biigle\Modules\Demo
DemoProjectController — Class in namespace Biigle\Modules\Demo\Http\Controllers\Api
DenbiServiceServiceProvider — Class in namespace Biigle\Modules\DenbiService
$ Publish#description — Property in class Publish: The console command description.
$ CountUniqueUser#description — Property in class CountUniqueUser: The console command description.
$ CountUser#description — Property in class CountUser: The console command description.
DetermineStorageUsage — Class in namespace Biigle\Modules\Kpis\Console\Commands
$ DetermineStorageUsage#description — Property in class DetermineStorageUsage: The console command description.
$ Config#description — Property in class Config: The console command description.
$ GenerateMissing#description — Property in class GenerateMissing: The console command description.
GenerateMissing::dispatcheProcessJob() — Method in class GenerateMissing
$ InitializeFeatureVectors#description — Property in class InitializeFeatureVectors: The console command description.
$ MigratePatchStorage#description — Property in class MigratePatchStorage: The console command description.
$ MigratePatchStorage#disk — Property in class MigratePatchStorage: Largo patch storage disk.
$ MigratePatchStorage#dryRun — Property in class MigratePatchStorage: Specifies if this is a dry run.
$ Publish#description — Property in class Publish: The console command description.
ImageAnnotationLabelFeatureVectorFactory::definition() — Method in class ImageAnnotationLabelFeatureVectorFactory: Define the model's default state.
VideoAnnotationLabelFeatureVectorFactory::definition() — Method in class VideoAnnotationLabelFeatureVectorFactory: Define the model's default state.
$ StoreLargoSession#dismissedImageAnnotations — Property in class StoreLargoSession: The dismissed_image_annotations request attribute.
$ StoreLargoSession#dismissedVideoAnnotations — Property in class StoreLargoSession: The dismissed_video_annotations request attribute.
$ ApplyLargoSession#dismissedImageAnnotations — Property in class ApplyLargoSession: Array of all dismissed image annotation IDs for each label.
$ ApplyLargoSession#dismissedVideoAnnotations — Property in class ApplyLargoSession: Array of all dismissed video annotation IDs for each label.
ApplyLargoSession::deleteDanglingAnnotations() — Method in class ApplyLargoSession: Delete annotations that now have no more labels attached.
$ CopyAnnotationFeatureVector#deleteWhenMissingModels — Property in class CopyAnnotationFeatureVector: Ignore this job if the annotation does not exist any more.
$ ProcessAnnotatedFile#deleteWhenMissingModels — Property in class ProcessAnnotatedFile: Ignore this job if the annotation does not exist any more.
RemoveAnnotationPatches::deletePatches() — Method in class RemoveAnnotationPatches: Delete the annotation patches.
RemoveImageAnnotationPatches::deletePatches() — Method in class RemoveImageAnnotationPatches: Delete the annotation patches.
RemoveVideoAnnotationPatches::deletePatches() — Method in class RemoveVideoAnnotationPatches: Delete the annotation patches.
AnnotationObserver::deleting() — Method in class AnnotationObserver: Handle the event of deleting a single annotation.
$ Config#description — Property in class Config: The console command description.
$ Publish#description — Property in class Publish: The console command description.
$ Job#distance — Property in class Job: Distance between laser points im cm to use for computation.
$ ProcessDelphiJob#distance — Property in class ProcessDelphiJob: Distance between laser points im cm to use for computation.
$ ProcessDelphiJob#deleteWhenMissingModels — Property in class ProcessDelphiJob: Ignore this job if the image does not exist any more.
$ ProcessImageManualJob#deleteWhenMissingModels — Property in class ProcessImageManualJob: Ignore this job if the image does not exist any more.
$ ProcessManualJob#distance — Property in class ProcessManualJob: Distance between laser points im cm to use for computation.
$ ProcessManualJob#deleteWhenMissingModels — Property in class ProcessManualJob: Ignore this job if the image does not exist any more.
$ ProcessVolumeDelphiJob#deleteWhenMissingModels — Property in class ProcessVolumeDelphiJob: Ignore this job if the image does not exist any more.
DelphiApply — Class in namespace Biigle\Modules\Laserpoints\Support: Wrapper for the Delphi laser points detection script.
DelphiGather — Class in namespace Biigle\Modules\Laserpoints\Support: Wrapper for the Delphi gather script.
Detect — Class in namespace Biigle\Modules\Laserpoints\Support: Wrapper for the manual laser points detection script.
$ PruneOldEmbeddings#description — Property in class PruneOldEmbeddings: The console command description.
$ EmbeddingAvailable#deleteWhenMissingModels — Property in class EmbeddingAvailable: Ignore this job if the image or user does not exist any more.
$ EmbeddingFailed#deleteWhenMissingModels — Property in class EmbeddingFailed: Ignore this job if the image or user does not exist any more.
$ GenerateEmbedding#deleteWhenMissingModels — Property in class GenerateEmbedding: Ignore this job if the image or user does not exist any more.
$ MigratePatchStorage#description — Property in class MigratePatchStorage: The console command description.
$ MigratePatchStorage#dryRun — Property in class MigratePatchStorage: Specifies if this is a dry run.
$ Publish#description — Property in class Publish: The console command description.
AnnotationCandidateFactory::definition() — Method in class AnnotationCandidateFactory: Define the model's default state.
AnnotationCandidateFeatureVectorFactory::definition() — Method in class AnnotationCandidateFeatureVectorFactory: Define the model's default state.
MaiaJobFactory::definition() — Method in class MaiaJobFactory: Define the model's default state.
MaiaJobStateFactory::definition() — Method in class MaiaJobStateFactory: Define the model's default state.
TrainingProposalFactory::definition() — Method in class TrainingProposalFactory: Define the model's default state.
TrainingProposalFeatureVectorFactory::definition() — Method in class TrainingProposalFeatureVectorFactory: Define the model's default state.
MaiaJobController::destroy() — Method in class MaiaJobController: Delete a MAIA job.
DestroyMaiaJob — Class in namespace Biigle\Modules\Maia\Http\Requests
$ ConvertAnnotationCandidates#deleteWhenMissingModels — Property in class ConvertAnnotationCandidates: Ignore this job if the MAIA job does not exist any more.
DeleteAnnotationPatchChunk — Class in namespace Biigle\Modules\Maia\Jobs
$ DeleteAnnotationPatchChunk#disk — Property in class DeleteAnnotationPatchChunk: Storage disk to delete files in.
DeleteAnnotationPatches — Class in namespace Biigle\Modules\Maia\Jobs
DeleteAnnotationPatches::deleteAnnotations() — Method in class DeleteAnnotationPatches: Delete MAIA annotations form the specified storage disk.
DetectionJob — Class in namespace Biigle\Modules\Maia\Jobs
$ DetectionJob#deleteWhenMissingModels — Property in class DetectionJob: Ignore this job if the MAIA job does not exist any more.
DetectionJob::dispatchFailure() — Method in class DetectionJob: Dispatch the job to notify the BIIGLE instance of a failure.
$ GenerateAnnotationCandidatePatches#deleteWhenMissingModels — Property in class GenerateAnnotationCandidatePatches: Ignore this job if the MAIA job does not exist any more.
$ GenerateAnnotationFeatureVectors#deleteWhenMissingModels — Property in class GenerateAnnotationFeatureVectors: Ignore this job if the MAIA job does not exist any more.
$ GenerateTrainingProposalPatches#deleteWhenMissingModels — Property in class GenerateTrainingProposalPatches: Ignore this job if the MAIA job does not exist any more.
$ NotifyNoveltyDetectionComplete#deleteWhenMissingModels — Property in class NotifyNoveltyDetectionComplete: Ignore this job if the MAIA job does not exist any more.
$ NotifyObjectDetectionComplete#deleteWhenMissingModels — Property in class NotifyObjectDetectionComplete: Ignore this job if the MAIA job does not exist any more.
NoveltyDetection::dispatchFailure() — Method in class NoveltyDetection: Dispatch the job to notify the BIIGLE instance of a failure.
ObjectDetection::dispatchResponse() — Method in class ObjectDetection: Dispatch the job to store the object detection results.
ObjectDetection::dispatchFailure() — Method in class ObjectDetection: Dispatch the job to notify the BIIGLE instance of a failure.
$ PrepareAnnotationsJob#deleteWhenMissingModels — Property in class PrepareAnnotationsJob: Ignore this job if the MAIA job does not exist any more.
DispatchMaiaJob — Class in namespace Biigle\Modules\Maia\Listeners
DispatchObjectDetection — Class in namespace Biigle\Modules\Maia\Listeners
$ MaiaJob#dispatchesEvents — Property in class MaiaJob: The event map for the model.
MaiaJobPolicy::destroy() — Method in class MaiaJobPolicy: Determine if the given user can destroy the MAIA job.
$ PruneStaleSubscribers#description — Property in class PruneStaleSubscribers: The console command description.
NewsletterFactory::definition() — Method in class NewsletterFactory: Define the model's default state.
NewsletterSubscriberFactory::definition() — Method in class NewsletterSubscriberFactory: Define the model's default state.
NewsletterController::destroy() — Method in class NewsletterController: Delete a newsletter draft
NewsletterSubscriberController::destroy() — Method in class NewsletterSubscriberController: Delete a newsletter subscriber.
NewsletterController::destroy() — Method in class NewsletterController: Deletes a newsletter subscriber.
DestroyNewsletterSubscriber — Class in namespace Biigle\Modules\Newsletter\Http\Requests
NewsletterPolicy::destroy() — Method in class NewsletterPolicy: Determine if the given user can destroy a newsletter.
NewsletterSubscriberPolicy::destroy() — Method in class NewsletterSubscriberPolicy: Determine if the given user can destroy the subscriber.
$ Publish#description — Property in class Publish: The console command description.
ReportFactory::definition() — Method in class ReportFactory: Define the model's default state.
ReportTypeFactory::definition() — Method in class ReportTypeFactory: Define the model's default state.
ReportsController::destroy() — Method in class ReportsController: Delete a report.
ExportAreaController::destroy() — Method in class ExportAreaController: Remove the export area.
ProjectObserver::deleted() — Method in class ProjectObserver: Update the source name of reports when the source is deleted.
ReportObserver::deleted() — Method in class ReportObserver: Remove report file of a report that should be deleted.
UserObserver::deleting() — Method in class UserObserver: Remove report files of a user that should be deleted.
VolumeObserver::deleted() — Method in class VolumeObserver: Update the source name of reports when the source is deleted.
ReportPolicy::destroy() — Method in class ReportPolicy: Determine if the given report can be destroyed by the user.
Report::deleteFile() — Method in class Report: Delete the file that belongs to this report.
$ CsvFile#delimiter — Property in class CsvFile: Field delimiter.
File::delete() — Method in class File: Delete the file.
$ Prune#description — Property in class Prune: The console command description.
$ Publish#description — Property in class Publish: The console command description.
$ Uuids#description — Property in class Uuids: The console command description.
ImportController::destroy() — Method in class ImportController
$ ArchiveManager#disk — Property in class ArchiveManager: Storage disk for uploaded import archives.
ArchiveManager::delete() — Method in class ArchiveManager: Delete the files of an import.
$ CheckExpiredUserDisks#description — Property in class CheckExpiredUserDisks: The console command description.
$ PruneExpiredUserDisks#description — Property in class PruneExpiredUserDisks: The console command description.
UserDiskFactory::definition() — Method in class UserDiskFactory: Define the model's default state.
UserDiskController::destroy() — Method in class UserDiskController: Delete a storage disk
$ ExtendUserDisk#disk — Property in class ExtendUserDisk: Storage disk that should be approved.
$ UpdateUserDisk#disk — Property in class UpdateUserDisk: The user disk that should be updated.
$ UserDiskExpiresSoon#disk — Property in class UserDiskExpiresSoon: The storage disk that was confirmed
$ UserDiskExpiresSoon#deleteWhenMissingModels — Property in class UserDiskExpiresSoon: Ignore this job if the disk does not exist any more.
UserDiskPolicy::destroy() — Method in class UserDiskPolicy: Determine if the given user can destroy the storage disk.
$ CheckExpiredStorageRequests#description — Property in class CheckExpiredStorageRequests: The console command description.
$ PruneExpiredStorageRequests#description — Property in class PruneExpiredStorageRequests: The console command description.
$ PruneStaleStorageRequests#description — Property in class PruneStaleStorageRequests: The console command description.
StorageRequestFactory::definition() — Method in class StorageRequestFactory: Define the model's default state.
StorageRequestFileFactory::definition() — Method in class StorageRequestFileFactory: Define the model's default state.
StorageRequestController::destroy() — Method in class StorageRequestController: Delete a storage request with all its files.
StorageRequestDirectoryController::destroy() — Method in class StorageRequestDirectoryController: Delete directories of a storage request
StorageRequestFileController::destroy() — Method in class StorageRequestFileController: Delete files of a storage request
DestroyStorageRequestDirectory — Class in namespace Biigle\Modules\UserStorage\Http\Requests
DestroyStorageRequestFile — Class in namespace Biigle\Modules\UserStorage\Http\Requests
$ ApproveStorageRequest#deleteWhenMissingModels — Property in class ApproveStorageRequest: Ignore this job if the image does not exist any more.
$ AssembleChunkedFile#deleteWhenMissingModels — Property in class AssembleChunkedFile: Ignore this job if the image does not exist any more.
DeleteStorageRequestDirectory — Class in namespace Biigle\Modules\UserStorage\Jobs
DeleteStorageRequestFile — Class in namespace Biigle\Modules\UserStorage\Jobs
$ StorageRequestApproved#deleteWhenMissingModels — Property in class StorageRequestApproved: Ignore this job if the image does not exist any more.
$ StorageRequestExpiresSoon#deleteWhenMissingModels — Property in class StorageRequestExpiresSoon: Ignore this job if the request does not exist any more.
$ StorageRequestSubmitted#deleteWhenMissingModels — Property in class StorageRequestSubmitted: Ignore this job if the image does not exist any more.
UserObserver::deleting() — Method in class UserObserver: Remove storage request files of a user that should be deleted.
StorageRequestPolicy::destroy() — Method in class StorageRequestPolicy: Determine if the given user can destroy the storage request.
$ ChunkedFileStreamPump#disk — Property in class ChunkedFileStreamPump: Storage disk to read chunks from.
ImageObserver::deleting() — Method in class ImageObserver: Handle the event of deleting a single image.
VideoObserver::deleting() — Method in class VideoObserver: Handle the event of deleting a single video.
VolumeObserver::deleting() — Method in class VolumeObserver: Handle the deletion of a volume.
AnnotationLabelPolicy::destroy() — Method in class AnnotationLabelPolicy: Determine if the user can delete the given annotation label.
AnnotationPolicy::destroy() — Method in class AnnotationPolicy: Determine if the user may delete the given annotation.
AnnouncementPolicy::destroy() — Method in class AnnouncementPolicy: Determine whether the user can delete the announcement.
ApiTokenPolicy::destroy() — Method in class ApiTokenPolicy: Determine if the given token can be deleted by the user.
FederatedSearchInstancePolicy::destroy() — Method in class FederatedSearchInstancePolicy: Determine whether the user can delete the instance.
LabelPolicy::destroy() — Method in class LabelPolicy: Determine if the user can remove the given label.
LabelTreePolicy::destroy() — Method in class LabelTreePolicy: Determine if the given label tree can be deleted by the user.
LabelTreeVersionPolicy::destroy() — Method in class LabelTreeVersionPolicy: Determine if the given label tree version can be deleted by the user.
PendingVolumePolicy::destroy() — Method in class PendingVolumePolicy: Determine if the given pending volume can be deleted by the user.
ProjectInvitationPolicy::destroy() — Method in class ProjectInvitationPolicy: Determine if the user can delete the given invitation.
ProjectPolicy::destroy() — Method in class ProjectPolicy: Determine if the given project can be deleted by the user.
UserPolicy::destroy() — Method in class UserPolicy: Determine if the given user can delete the user.
VolumeFileLabelPolicy::destroy() — Method in class VolumeFileLabelPolicy: Determine if the user can delete the given image label.
VolumeFilePolicy::destroy() — Method in class VolumeFilePolicy: Determine if the user can delete the given file.
VolumePolicy::destroy() — Method in class VolumePolicy: Determine if the given volume can be deleted by the user.
HasMetadataFile::deleteMetadata() — Method in class HasMetadataFile
CreateCopriaColorSortSequencesTable::down() — Method in class CreateCopriaColorSortSequencesTable: Reverse the migrations.
CreateGeoOverlaysTable::down() — Method in class CreateGeoOverlaysTable: Reverse the migrations.
CreateIndices::down() — Method in class CreateIndices: Reverse the migrations.
CreateReportsTable::down() — Method in class CreateReportsTable: Reverse the migrations.
InitializeMaiaTables::down() — Method in class InitializeMaiaTables: Reverse the migrations.
RemoveGeoOverlaysTable::down() — Method in class RemoveGeoOverlaysTable: Reverse the migrations.
RenameReportTypes::down() — Method in class RenameReportTypes: Reverse the migrations.
RenameTable::down() — Method in class RenameTable: Reverse the migrations.
RenameTransectColumn::down() — Method in class RenameTransectColumn: Reverse the migrations.
RenameVideoSourceType::down() — Method in class RenameVideoSourceType: Reverse the migrations.
UpdateJobParams::down() — Method in class UpdateJobParams: Reverse the migrations.

E

FileCache::exists() — Method in class FileCache: Check if a file exists.
FileCache::exists() — Method in class FileCache: Check if a file exists.
FileCache::existsRemote() — Method in class FileCache: Check for existence of a remte file.
FileCache::existsDisk() — Method in class FileCache: Check for existence of a file from a storage disk.
FileCache::ensurePathExists() — Method in class FileCache: Creates the cache directory if it doesn't exist yet.
FileCacheFake::exists() — Method in class FileCacheFake: Check if a file exists.
UsersController::edit() — Method in class UsersController: Shows the admin edit user page.
VolumeController::edit() — Method in class VolumeController: Shows the volume edit page.
EncryptCookies — Class in namespace Biigle\Http\Middleware
$ EncryptCookies#except — Property in class EncryptCookies: The names of the cookies that should not be encrypted.
$ PreventRequestsDuringMaintenance#except — Property in class PreventRequestsDuringMaintenance: The URIs that should be reachable while maintenance mode is enabled.
$ TrimStrings#except — Property in class TrimStrings: The names of the attributes that should not be trimmed.
$ UpdateUserActivity#except — Property in class UpdateUserActivity: The URIs that should be excluded from updating the user activity.
$ ValidateSignature#except — Property in class ValidateSignature: The names of the query string parameters that should be ignored.
$ VerifyCsrfToken#except — Property in class VerifyCsrfToken: The URIs that should be excluded from CSRF verification.
Sort::execute() — Method in class Sort: Compute a color sort sequence.
EnsureTokenIsValid — Class in namespace Biigle\Modules\Kpis\Http\Middleware
$ StoreLargoSession#emptyRequest — Property in class StoreLargoSession: Specifies whether the request is empty.
GenerateFeatureVectors::ensureBoxAspectRatio() — Method in class GenerateFeatureVectors: Modify a bounding box so it adheres to the aspect ratio given by width and height.
DelphiApply::execute() — Method in class DelphiApply: Execute a new Delphi laser point detection.
DelphiGather::execute() — Method in class DelphiGather: Execute a new Delphi preprocessing.
Detect::execute() — Method in class Detect: Execute a new manual laser point detection.
LaserpointsScript::exec() — Method in class LaserpointsScript: Execute a laser point detection command.
EmbeddingAvailable — Class in namespace Biigle\Modules\MagicSam\Events
EmbeddingFailed — Class in namespace Biigle\Modules\MagicSam\Events
DetectionJob::ensureDirectory() — Method in class DetectionJob: Creates the specified directory if it does not exist.
Converter::extractIfdoLabels() — Method in class Converter
Converter::extractIfdoAnnotators() — Method in class Converter
AdminController::edit() — Method in class AdminController: Shows the edit newsletter view.
EmailVerificationRequest — Class in namespace Biigle\Modules\Newsletter\Http\Requests
ExportAreaController — Class in namespace Biigle\Modules\Reports\Http\Controllers\Api\Volumes
$ CsvFile#enclosure — Property in class CsvFile: String enclosure character.
$ CsvFile#escape_char — Property in class CsvFile: Escape character.
ExtendedReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Projects\ImageAnnotations
$ ProjectReportGenerator#extension — Property in class ProjectReportGenerator: File extension of the report file.
$ ReportGenerator#extension — Property in class ReportGenerator: File extension of the report file.
ReportGenerator::expandLabelName() — Method in class ReportGenerator: Constructs a label name from the names of all parent labels and the label itself.
$ IfdoReportGenerator#extension — Property in class IfdoReportGenerator: File extension of the report file.
$ AbundanceReportGenerator#extension — Property in class AbundanceReportGenerator: File extension of the report file.
$ AnnotationLocationReportGenerator#extension — Property in class AnnotationLocationReportGenerator: File extension of the report file.
AnnotationLocationReportGenerator::estimateAnnotationPosition() — Method in class AnnotationLocationReportGenerator: Estimate the position of an annotation in world coordinates.
$ AreaReportGenerator#extension — Property in class AreaReportGenerator: File extension of the report file.
$ BasicReportGenerator#extension — Property in class BasicReportGenerator: File extension of the report file.
$ CocoReportGenerator#extension — Property in class CocoReportGenerator: File extension of the report file.
$ CsvReportGenerator#extension — Property in class CsvReportGenerator: File extension of the report file.
ExtendedReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Volumes\ImageAnnotations
$ ExtendedReportGenerator#extension — Property in class ExtendedReportGenerator: File extension of the report file.
$ FullReportGenerator#extension — Property in class FullReportGenerator: File extension of the report file.
$ ImageLocationReportGenerator#extension — Property in class ImageLocationReportGenerator: File extension of the report file.
$ BasicReportGenerator#extension — Property in class BasicReportGenerator: File extension of the report file.
$ CsvReportGenerator#extension — Property in class CsvReportGenerator: File extension of the report file.
$ ImageLocationReportGenerator#extension — Property in class ImageLocationReportGenerator: File extension of the report file.
$ CsvReportGenerator#extension — Property in class CsvReportGenerator: File extension of the report file.
$ CsvReportGenerator#extension — Property in class CsvReportGenerator: File extension of the report file.
VolumeReportGenerator::expandLabelName() — Method in class VolumeReportGenerator: Constructs a label name from the names of all parent labels and the label itself.
VolumeReportGenerator::executeScript() — Method in class VolumeReportGenerator: Execute the external report parsing Python script.
ExportAdminController — Class in namespace Biigle\Modules\Sync\Http\Controllers\Views
Export — Class in namespace Biigle\Modules\Sync\Support\Export
Import::expectedFiles() — Method in class Import: The files expected by this import.
Import::expectKeysInJson() — Method in class Import: Validates a JSON file to contain an array of objects, each of which has all the expected keys.
Import::expectColumnsInCsv() — Method in class Import: Validates a CSV file to contain the expected columns.
LabelTreeImport::expectedFiles() — Method in class LabelTreeImport: The files expected by this import.
PublicLabelTreeImport::expectedFiles() — Method in class PublicLabelTreeImport: The files expected by this import.
UserImport::expectedFiles() — Method in class UserImport: The files expected by this import.
VolumeImport::expectedFiles() — Method in class VolumeImport: The files expected by this import.
UserDiskController::extend() — Method in class UserDiskController: Extend a storage disk
ExtendUserDisk — Class in namespace Biigle\Modules\UserDisks\Http\Requests
UserDisk::extend() — Method in class UserDisk: Extend the expiration date of the disk.
StorageRequestController::extend() — Method in class StorageRequestController: Extend a storage request
ExtendStorageRequest — Class in namespace Biigle\Modules\UserStorage\Http\Requests
ProjectPolicy::editIn() — Method in class ProjectPolicy: Determine if the user can edit things in the given project.
VolumePolicy::editIn() — Method in class VolumePolicy: Determine if the user can edit something in the given volume.
Project::editors() — Method in class Project: All members of this project with the editor role.
EventServiceProvider — Class in namespace Biigle\Providers
Role::expert() — Method in class Role
Role::expertId() — Method in class Role
Role::editor() — Method in class Role
Role::editorId() — Method in class Role
WormsAdapter::extractParents() — Method in class WormsAdapter: Extract the aphia IDs in correct ordering from a WoRMS classification hierarchy.
ParserFactory::extend() — Method in class ParserFactory: Add a new metadata parser to the list of known parsers.
Shape::ellipse() — Method in class Shape
Shape::ellipseId() — Method in class Shape

F

Annotation::file() — Method in class Annotation: The file, this annotation belongs to.
$ AnnotationLabel#fillable — Property in class AnnotationLabel: The attributes that are mass assignable.
$ Announcement#fillable — Property in class Announcement: The attributes that are mass assignable.
$ UpdateVideoMetadata#ffprobe — Property in class UpdateVideoMetadata: The FFProbe video instance.
LabelSourceAdapterContract::find() — Method in class LabelSourceAdapterContract: Find a label in the label source.
FederatedSearchInstance — Class in namespace Biigle
$ FederatedSearchInstance#fillable — Property in class FederatedSearchInstance: The attributes that are mass assignable.
FederatedSearchModel — Class in namespace Biigle
File — Class in namespace Biigle\FileCache\Contracts
FileCache — Class in namespace Biigle\FileCache\Contracts
FileLockedException — Class in namespace Biigle\FileCache\Exceptions
FileCache — Class in namespace Biigle\FileCache\Facades
FileCache::fake() — Method in class FileCache: Use testing instance.
FileCache — Class in namespace Biigle\FileCache: The file cache.
$ FileCache#files — Property in class FileCache: The Filesytem instance to use
FileCacheServiceProvider — Class in namespace Biigle\FileCache
FileCacheFake — Class in namespace Biigle\FileCache\Testing
Controller::fuzzyRedirect() — Method in class Controller: Redirects to the _redirect URL, to a route or else back.
FederatedSearchIndexController — Class in namespace Biigle\Http\Controllers\Api
FederatedSearchInstanceController — Class in namespace Biigle\Http\Controllers\Api
LabelSourceController::find() — Method in class LabelSourceController: Find labels from a label source.
UserController::find() — Method in class UserController: Finds all users with firstnames or lastnames like $pattern.
FileLabelsController — Class in namespace Biigle\Http\Controllers\Api\Volumes
FilenamesController — Class in namespace Biigle\Http\Controllers\Api\Volumes
FileLabelController — Class in namespace Biigle\Http\Controllers\Api\Volumes\Filters
FileLabelUserController — Class in namespace Biigle\Http\Controllers\Api\Volumes\Filters
FilenameController — Class in namespace Biigle\Http\Controllers\Api\Volumes\Filters
ForgotPasswordController — Class in namespace Biigle\Http\Controllers\Auth
FederatedSearchController — Class in namespace Biigle\Http\Controllers\Views\Admin
$ DestroyVolumeFile#file — Property in class DestroyVolumeFile: The file that should be deleted.
$ LinkVideoAnnotation#firstAnnotation — Property in class LinkVideoAnnotation: The first annotation that should be linked.
$ StoreVolumeFileLabel#file — Property in class StoreVolumeFileLabel: The file to which the label should be attached.
Ifdo::fromFile() — Method in class Ifdo
Ifdo::fromString() — Method in class Ifdo
$ Image#fillable — Property in class Image: The attributes that are mass assignable.
ImageAnnotation::file() — Method in class ImageAnnotation: The file, this annotation belongs to.
ImageLabel::file() — Method in class ImageLabel: The file, this volume file label belongs to.
$ CreateNewImagesOrVideos#filenames — Property in class CreateNewImagesOrVideos: The filenames of the files to create.
ProcessNewImage::fracToFloat() — Method in class ProcessNewImage: Converts a fracture (string) like "1/2" to a float.
$ ProcessNewVideo#ffmpegVideo — Property in class ProcessNewVideo: The FFMpeg video instance.
$ ProcessNewVideo#ffprobe — Property in class ProcessNewVideo: The FFProbe instance.
$ LsloginId#fillable — Property in class LsloginId: The attributes that are mass assignable.
ComputeNewSequence::failed() — Method in class ComputeNewSequence: Handle a job failure.
FileCoordinatesController — Class in namespace Biigle\Modules\Geo\Http\Controllers\Api
$ GenerateMissing#force — Property in class GenerateMissing: Regenerate data without checking if it is missing.
FilterImageAnnotationsByLabelController — Class in namespace Biigle\Modules\Largo\Http\Controllers\Api\Projects
FilterVideoAnnotationsByLabelController — Class in namespace Biigle\Modules\Largo\Http\Controllers\Api\Projects
FilterImageAnnotationsByLabelController — Class in namespace Biigle\Modules\Largo\Http\Controllers\Api\Volumes
FilterVideoAnnotationsByLabelController — Class in namespace Biigle\Modules\Largo\Http\Controllers\Api\Volumes
$ StoreLargoSession#force — Property in class StoreLargoSession: The force request attribute.
$ ImageAnnotationLabelFeatureVector#fillable — Property in class ImageAnnotationLabelFeatureVector: The attributes that are mass assignable.
$ ApplyLargoSession#force — Property in class ApplyLargoSession: Whether to dismiss labels even if they were created by other users.
$ VideoAnnotationLabelFeatureVector#fillable — Property in class VideoAnnotationLabelFeatureVector: The attributes that are mass assignable.
DelphiGather::finish() — Method in class DelphiGather: Finish the Delphi preprocessing after all images have been processed.
FiltersInvalidLaserPoints — Class in namespace Biigle\Modules\Laserpoints\Traits
FiltersInvalidLaserPoints::filterInvalidLaserPoints() — Method in class FiltersInvalidLaserPoints: Removes items from the annotations array if the laser point annotations are invalid.
$ EmbeddingAvailable#filename — Property in class EmbeddingAvailable: The embedding filename on the storage disk.
$ AnnotationCandidateFeatureVector#fillable — Property in class AnnotationCandidateFeatureVector: The attributes that are mass assignable.
StoreMaiaJob::failedAuthorization() — Method in class StoreMaiaJob: Handle a failed authorization attempt.
$ DeleteAnnotationPatchChunk#files — Property in class DeleteAnnotationPatchChunk: Files to delete in the storage disk.
DetectionJob::failed() — Method in class DetectionJob: The job failed to process.
DispatchMaiaJob::failed() — Method in class DispatchMaiaJob: Handle a job failure.
DispatchObjectDetection::failed() — Method in class DispatchObjectDetection: Handle a job failure.
$ TrainingProposalFeatureVector#fillable — Property in class TrainingProposalFeatureVector: The attributes that are mass assignable.
EmailVerificationRequest::fulfill() — Method in class EmailVerificationRequest: Fulfill the email verification request.
$ Newsletter#fillable — Property in class Newsletter: The attributes that are mass assignable.
$ NewsletterSubscriber#fillable — Property in class NewsletterSubscriber: The attributes that are mass assignable.
File — Class in namespace Biigle\Modules\Reports\Support
$ AbundanceReportGenerator#filename — Property in class AbundanceReportGenerator: Name of the report for use as (part of) a filename.
$ AnnotationLocationReportGenerator#filename — Property in class AnnotationLocationReportGenerator: Name of the report for use as (part of) a filename.
$ AreaReportGenerator#filename — Property in class AreaReportGenerator: Name of the report for use as (part of) a filename.
$ BasicReportGenerator#filename — Property in class BasicReportGenerator: Name of the report for use as (part of) a filename.
$ CocoReportGenerator#filename — Property in class CocoReportGenerator: Name of the report for use as (part of) a filename.
$ CsvReportGenerator#filename — Property in class CsvReportGenerator: Name of the report for use as (part of) a filename.
$ ExtendedReportGenerator#filename — Property in class ExtendedReportGenerator: Name of the report for use as (part of) a filename.
FullReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Projects\ImageAnnotations
$ FullReportGenerator#filename — Property in class FullReportGenerator: Name of the report for use as (part of) a filename.
$ ImageLocationReportGenerator#filename — Property in class ImageLocationReportGenerator: Name of the report for use as (part of) a filename.
$ ImageIfdoReportGenerator#filename — Property in class ImageIfdoReportGenerator: Name of the report for use as (part of) a filename.
$ BasicReportGenerator#filename — Property in class BasicReportGenerator: Name of the report for use as (part of) a filename.
$ CsvReportGenerator#filename — Property in class CsvReportGenerator: Name of the report for use as (part of) a filename.
$ ImageLocationReportGenerator#filename — Property in class ImageLocationReportGenerator: Name of the report for use as (part of) a filename.
$ CsvReportGenerator#filename — Property in class CsvReportGenerator: Name of the report for use as (part of) a filename.
$ VideoIfdoReportGenerator#filename — Property in class VideoIfdoReportGenerator: Name of the report for use as (part of) a filename.
$ CsvReportGenerator#filename — Property in class CsvReportGenerator: Name of the report for use as (part of) a filename.
$ ReportGenerator#filename — Property in class ReportGenerator: Name of the report for use as (part of) a filename.
$ AbundanceReportGenerator#filename — Property in class AbundanceReportGenerator: Name of the report for use as (part of) a filename.
$ AnnotationLocationReportGenerator#filename — Property in class AnnotationLocationReportGenerator: Name of the report for use as (part of) a filename.
$ AreaReportGenerator#filename — Property in class AreaReportGenerator: Name of the report for use as (part of) a filename.
$ BasicReportGenerator#filename — Property in class BasicReportGenerator: Name of the report for use as (part of) a filename.
$ CocoReportGenerator#filename — Property in class CocoReportGenerator: Name of the report for use as (part of) a filename.
$ CsvReportGenerator#filename — Property in class CsvReportGenerator: Name of the report for use as (part of) a filename.
$ ExtendedReportGenerator#filename — Property in class ExtendedReportGenerator: Name of the report for use as (part of) a filename.
FullReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Volumes\ImageAnnotations
$ FullReportGenerator#filename — Property in class FullReportGenerator: Name of the report for use as (part of) a filename.
$ ImageLocationReportGenerator#filename — Property in class ImageLocationReportGenerator: Name of the report for use as (part of) a filename.
$ ImageIfdoReportGenerator#filename — Property in class ImageIfdoReportGenerator: Name of the report for use as (part of) a filename.
$ BasicReportGenerator#filename — Property in class BasicReportGenerator: Name of the report for use as (part of) a filename.
$ CsvReportGenerator#filename — Property in class CsvReportGenerator: Name of the report for use as (part of) a filename.
$ ImageLocationReportGenerator#filename — Property in class ImageLocationReportGenerator: Name of the report for use as (part of) a filename.
$ CsvReportGenerator#filename — Property in class CsvReportGenerator: Name of the report for use as (part of) a filename.
$ VideoIfdoReportGenerator#filename — Property in class VideoIfdoReportGenerator: Name of the report for use as (part of) a filename.
$ CsvReportGenerator#filename — Property in class CsvReportGenerator: Name of the report for use as (part of) a filename.
Import::filesMatch() — Method in class Import: Check if this import matches to the given import files.
Import::files() — Method in class Import: Get the basename of each file of this import.
$ UserDisk#fillable — Property in class UserDisk: The attributes that are mass assignable.
$ DestroyStorageRequestFile#file — Property in class DestroyStorageRequestFile: Storage request file that should be deleted.
$ AssembleChunkedFile#file — Property in class AssembleChunkedFile: The file to assemble.
$ DeleteStorageRequestFile#fileId — Property in class DeleteStorageRequestFile: ID of the file that should be deleted
FilePrefix — Class in namespace Biigle\Modules\UserStorage\Rules
$ StorageRequest#fillable — Property in class StorageRequest: The attributes that are mass assignable.
StorageRequest::files() — Method in class StorageRequest: The files belonging to this storage request.
$ StorageRequestFile#fillable — Property in class StorageRequestFile: The attributes that are mass assignable.
$ PendingVolume#fillable — Property in class PendingVolume: The attributes that are mass assignable.
FederatedSearchInstancePolicy — Class in namespace Biigle\Policies
ProjectPolicy::forceEditIn() — Method in class ProjectPolicy: Determine if the user can edit things created by other users in the given project.
VolumePolicy::forceEditIn() — Method in class VolumePolicy: Determine if the user can edit things created by other users in the given volume.
Project::flushGeoInfoCache() — Method in class Project: Flush the cached information if this project has volumes which have images with GPS coordinates.
$ ProjectInvitation#fillable — Property in class ProjectInvitation: The attributes that are mass assignable.
ImageMetadata::fileMetadataPasses() — Method in class ImageMetadata
$ VolumeFileUnique#files — Property in class VolumeFileUnique: The filenames that already exist.
WormsAdapter::find() — Method in class WormsAdapter: Find labels by scientific name.
WormsAdapter::filterUnaccepted() — Method in class WormsAdapter: Returns true for accepted WoRMS items and false otherwise.
FileMetadata — Class in namespace Biigle\Services\MetadataParsing
$ MetadataParser#fileObject — Property in class MetadataParser
$ VideoMetadata#frames — Property in class VideoMetadata
$ VolumeMetadata#files — Property in class VolumeMetadata
FilesystemManager — Class in namespace Biigle\Support
User::federatedSearchModels() — Method in class User: The federated search models that the user can access
$ Video#fillable — Property in class Video: The attributes that are mass assignable.
$ VideoAnnotation#fillable — Property in class VideoAnnotation: The attributes that are mass assignable.
VideoAnnotation::file() — Method in class VideoAnnotation: The file, this annotation belongs to.
VideoLabel::file() — Method in class VideoLabel: The file, this volume file label belongs to.
$ Volume#fillable — Property in class Volume: The attributes that are mass assignable.
Volume::files() — Method in class Volume: The images or videos belonging to this volume.
Volume::flushThumbnailCache() — Method in class Volume: Flush the cache that stores the volume thumbnail.
Volume::flushGeoInfoCache() — Method in class Volume: Flush the cached information if this volume has images with GPS coordinates.
$ VolumeFile#filename — Property in class VolumeFile
VolumeFileLabel::file() — Method in class VolumeFileLabel: The file, this volume file label belongs to.

G

Annotation::getFileIdAttribute() — Method in class Annotation: Get the file_id attribute
Annotation::getPoints() — Method in class Annotation: Get the points array of the annotation.
Annotation::getShape() — Method in class Annotation: Get the shape of an annotation.
Annotation::getFile() — Method in class Annotation: Get the image/video, the annotation belongs to.
AnnotationSession::getVolumeFileAnnotations() — Method in class AnnotationSession: Get the annotations of the file (with labels), filtered by the restrictions of this annotation session.
AnnotationSession::getStartsAtIso8601Attribute() — Method in class AnnotationSession: Get the start date formatted as ISO8601 string.
AnnotationSession::getEndsAtIso8601Attribute() — Method in class AnnotationSession: Get the end date formatted as ISO8601 string.
Announcement::getActive() — Method in class Announcement: Get the currently active announcement.
Annotation::getPoints() — Method in class Annotation: Get the points array of the annotation.
Annotation::getShape() — Method in class Annotation: Get the shape of an annotation.
Annotation::getFile() — Method in class Annotation: Get the image/video, the annotation belongs to.
Modules::getFacadeAccessor() — Method in class Modules: Get the registered name of the component.
FederatedSearchInstance::getRemoteTokenAttribute() — Method in class FederatedSearchInstance: Get the remote_token attribute.
FederatedSearchModel::getThumbnailUrlAttribute() — Method in class FederatedSearchModel: Get the model thumbnail url attribute.
FederatedSearchModel::getThumbnailUrlsAttribute() — Method in class FederatedSearchModel: Get the model thumbnail url attribute.
File::getUrl() — Method in class File: Get the file URL.
FileCache::get() — Method in class FileCache: Perform a callback with the path of a cached file. This takes care of shared locks on the cached file file so it is not corrupted due to concurrent write operations.
FileCache::getOnce() — Method in class FileCache: Like get but deletes the cached file afterwards (if it is not used somewhere else).
FileCache::getStream() — Method in class FileCache: Get a stream resource for an file. If the file is cached, the resource points to the cached file instead. This will not cache uncached files. Make sure to close the streams!
FileCache::getFacadeAccessor() — Method in class FileCache: Get the registered name of the component.
FileCache::get() — Method in class FileCache: Perform a callback with the path of a cached file. This takes care of shared locks on the cached file file so it is not corrupted due to concurrent write operations.
FileCache::getOnce() — Method in class FileCache: Like get but deletes the cached file afterwards (if it is not used somewhere else).
FileCache::getStream() — Method in class FileCache: Get a stream resource for an file. If the file is cached, the resource points to the cached file instead. This will not cache uncached files. Make sure to close the streams!
FileCache::getDiskFile() — Method in class FileCache: Cache an file from a storage disk and get the path to the cached file. Files from local disks are not cached.
FileCache::getCachedPath() — Method in class FileCache: Get the path to the cached file file.
FileCache::getFileStream() — Method in class FileCache: Get the stream resource for an file.
FileCache::getDisk() — Method in class FileCache: Get the storage disk on which a file is stored.
GenericFile — Class in namespace Biigle\FileCache
GenericFile::getUrl() — Method in class GenericFile: Get the file URL.
FileCacheFake::get() — Method in class FileCacheFake: Perform a callback with the path of a cached file. This takes care of shared locks on the cached file file so it is not corrupted due to concurrent write operations.
FileCacheFake::getOnce() — Method in class FileCacheFake: Like get but deletes the cached file afterwards (if it is not used somewhere else).
FileCacheFake::getStream() — Method in class FileCacheFake: Get a stream resource for an file. If the file is cached, the resource points to the cached file instead. This will not cache uncached files. Make sure to close the streams!
ImageLabelController::getFileModel() — Method in class ImageLabelController: Get the file model class name.
ImageLabelController::getFileLabelModel() — Method in class ImageLabelController: Get the file label model class name.
VideoFileController::getByteRange() — Method in class VideoFileController: Determine the byte range that should be included in the response.
VideoLabelController::getFileModel() — Method in class VideoLabelController: Get the file model class name.
VideoLabelController::getFileLabelModel() — Method in class VideoLabelController: Get the file label model class name.
VolumeController::getFileIdsSortedByAnnotationTimestamps() — Method in class VolumeController: Return file ids which are sorted by annotations.created_at
VolumeFileLabelController::getFileModel() — Method in class VolumeFileLabelController: Get the file model class name.
VolumeFileLabelController::getFileLabelModel() — Method in class VolumeFileLabelController: Get the file label model class name.
IndexController::get() — Method in class IndexController: Shows the admin dashboard.
UsersController::get() — Method in class UsersController: Shows the admin users page.
ProjectStatisticsController::getVolumeStatistics() — Method in class ProjectStatisticsController: Get the statistics of volumes with a certain media type.
VolumeController::getProjects() — Method in class VolumeController: Get all projects that belong to a volume and that the user can access.
DestroyImage::getFileModel() — Method in class DestroyImage: Get the file model class name.
DestroyVideo::getFileModel() — Method in class DestroyVideo: Get the file model class name.
DestroyVolumeFile::getFileModel() — Method in class DestroyVolumeFile: Get the file model class name.
StoreImageLabel::getFileModel() — Method in class StoreImageLabel: Get the file model class;
StoreLabelTreeMerge::getFlatLabels() — Method in class StoreLabelTreeMerge: Returns a flat list of a nested array of labels and assigns a parent_index to each label, which indicates the position of the parent label in the list (as opposed to a parent_id, sinde the labels have no ID yet).
StoreVideoLabel::getFileModel() — Method in class StoreVideoLabel: Get the file model class;
StoreVolumeFileLabel::getFileModel() — Method in class StoreVolumeFileLabel: Get the file model class;
Ifdo::getValidator() — Method in class Ifdo
Ifdo::getErrors() — Method in class Ifdo
Ifdo::getDebug() — Method in class Ifdo
Ifdo::getJsonData() — Method in class Ifdo
Ifdo::getImageSetHeader() — Method in class Ifdo
Ifdo::getImageSetItems() — Method in class Ifdo
Ifdo::getIfdoVersion() — Method in class Ifdo
Image::getFile() — Method in class Image: Get the original image as download response.
Image::getTilingInProgressAttribute() — Method in class Image: Get the tilingInProgress attribute.
Image::getThumbnailUrlAttribute() — Method in class Image: URL to the thumbnail of this image.
ImageAnnotation::getFileIdAttribute() — Method in class ImageAnnotation: Get the file_id attribute
ImageLabel::getFileIdAttribute() — Method in class ImageLabel: Get the file ID attribute.
GenerateFederatedSearchIndex — Class in namespace Biigle\Jobs
GenerateFederatedSearchIndex::generateLabelTreeIndex() — Method in class GenerateFederatedSearchIndex: Generate the label tree index.
GenerateFederatedSearchIndex::generateProjectIndex() — Method in class GenerateFederatedSearchIndex: Generate the project index.
GenerateFederatedSearchIndex::generateVolumeIndex() — Method in class GenerateFederatedSearchIndex: Generate the volume index.
ProcessNewImage::getExif() — Method in class ProcessNewImage: Get the exif information of an image if possible.
ProcessNewImage::getGps() — Method in class ProcessNewImage: Converts a EXIF GPS coordinate to a float see: http://stackoverflow.com/a/2572991/1796523.
ProcessNewImage::getVipsImage() — Method in class ProcessNewImage: Get a Vips image instance for the file.
ProcessNewVideo::getCodec() — Method in class ProcessNewVideo: Get the codec of a video
ProcessNewVideo::getVideoDuration() — Method in class ProcessNewVideo: Get the duration of the video.
ProcessNewVideo::getVideoDimensions() — Method in class ProcessNewVideo: Get the dimensions of a video
ProcessNewVideo::generateVideoThumbnail() — Method in class ProcessNewVideo: Generate a thumbnail from the video at the specified time.
ProcessNewVideo::getThumbnailTimes() — Method in class ProcessNewVideo: Get the times at which thumbnails should be sampled.
TileSingleImage::generateTiles() — Method in class TileSingleImage: Generate tiles for the image and put them to temporary storage.
TileSingleImage::getVipsImage() — Method in class TileSingleImage: Get the vips image instance.
TileSingleImage::getIterator() — Method in class TileSingleImage: Get the recursive directory iterator for the given path.
TrackObject::getRateLimitCacheKey() — Method in class TrackObject: Return the cache key to store the number of concurrent jobs for each user.
TrackObject::getTrackingKeyframes() — Method in class TrackObject: Execute the object tracking method and get the resulting annotation key frames.
TrackObject::getInputJsonPath() — Method in class TrackObject: Get the path to to input file for the object tracking script.
TrackObject::getOutputJsonPath() — Method in class TrackObject: Get the path to to output file for the object tracking script.
TrackObject::getStartWindow() — Method in class TrackObject: Get the coordinates and dimensions of the start window for the object tracking script.
TrackObject::getPointsFromKeyframe() — Method in class TrackObject: Get the points of a keyframe depending on the annotation shape.
UpdateFederatedSearchIndex::getValidator() — Method in class UpdateFederatedSearchIndex: Get the validator instance for the response.
LabelSource::getAdapter() — Method in class LabelSource: Returns the label source adapter of this label source.
LabelTree::getVersionedNameAttribute() — Method in class LabelTree: Get the name with a version suffix of this label tree.
CreateRedisLogger::getFallbackChannelName() — Method in class CreateRedisLogger: Get fallback log channel name.
LogManager::getLogFilenames() — Method in class LogManager: Get the filenames of the logfiles.
LogManager::getLogFileContent() — Method in class LogManager: Get the content of a logfile.
LogManager::getRedisLogMessages() — Method in class LogManager: Get the log messages.
LogManager::getRecentCount() — Method in class LogManager: Get the number of log messages of the last day(s).
LogManager::getFallbackChannelName() — Method in class LogManager: Get fallback log channel name.
AnnotationAssistanceRequest::generateToken() — Method in class AnnotationAssistanceRequest: Generate a token for use in the annotation assistance request URL.
AnnotationAssistanceRequest::getResponseLabelAttribute() — Method in class AnnotationAssistanceRequest: Get the chosen response label from the request labels array.
GeoServiceProvider — Class in namespace Biigle\Modules\Geo
DetermineStorageUsage::getSizeInGB() — Method in class DetermineStorageUsage
Requests::getActions() — Method in class Requests
Requests::getVisits() — Method in class Requests
Storage::getStorageUsage() — Method in class Storage
User::getUser() — Method in class User
User::getUniqueUser() — Method in class User
GenerateMissing — Class in namespace Biigle\Modules\Largo\Console\Commands
StoreLargoSession::getAffectedAnnotations() — Method in class StoreLargoSession: Get a list of unique annotation IDs that are either dismissed or changed.
StoreLargoSession::getRequiredLabelTrees() — Method in class StoreLargoSession: Returns the IDs of all label trees that must be available to apply the changes.
StoreProjectLargoSession::getAffectedImageVolumes() — Method in class StoreProjectLargoSession: Get the IDs of the image volumes that are associated with the referenced image annotations.
StoreProjectLargoSession::getAffectedVideoVolumes() — Method in class StoreProjectLargoSession: Get the IDs of the video volumes that are associated with the referenced video annotations.
StoreVolumeLargoSession::getAvailableLabelTrees() — Method in class StoreVolumeLargoSession: Get label trees of projects that the requesting user and the volume have in common.
CopyAnnotationFeatureVector::getFeatureVectorQuery() — Method in class CopyAnnotationFeatureVector: Get a query for the feature vectors associated with the annotation of this job.
CopyImageAnnotationFeatureVector::getFeatureVectorQuery() — Method in class CopyImageAnnotationFeatureVector: Get a query for the feature vectors associated with the annotation of this job.
CopyVideoAnnotationFeatureVector::getFeatureVectorQuery() — Method in class CopyVideoAnnotationFeatureVector: Get a query for the feature vectors associated with the annotation of this job.
GenerateFeatureVectors — Class in namespace Biigle\Modules\Largo\Jobs
GenerateFeatureVectors::getAnnotationBoundingBox() — Method in class GenerateFeatureVectors: Get the bounding box of an annotation
GenerateFeatureVectors::getPointBoundingBox() — Method in class GenerateFeatureVectors: Get the bounding box of a point annotation.
GenerateFeatureVectors::getCircleBoundingBox() — Method in class GenerateFeatureVectors: Get the bounding box of a circle annotation.
GenerateFeatureVectors::getPolygonBoundingBox() — Method in class GenerateFeatureVectors: Get the bounding box of an annotation that is no point, circle or whole frame.
GenerateFeatureVectors::generateInput() — Method in class GenerateFeatureVectors: Generate the input for the python script.
GenerateFeatureVectors::generateFileInput() — Method in class GenerateFeatureVectors
InitializeFeatureVectorChunk::getInsertData() — Method in class InitializeFeatureVectorChunk: Get the array to insert new feature vector models into the DB.
InitializeFeatureVectorChunk::getFeatureVectors() — Method in class InitializeFeatureVectorChunk: Generate feature vectors from the thumbnails of many annotations.
ProcessAnnotatedFile::getTargetPath() — Method in class ProcessAnnotatedFile: Assemble the target path for an annotation patch.
ProcessAnnotatedFile::getAnnotationPatch() — Method in class ProcessAnnotatedFile: Get the annotation patch as buffer.
ProcessAnnotatedFile::generateFeatureVectors() — Method in class ProcessAnnotatedFile: Generates feature vectors for the specified annotations belonging to the file of this job. This method either creates new feature vector models or updates the existing ones for the annotations.
ProcessAnnotatedFile::getAnnotationQuery() — Method in class ProcessAnnotatedFile: Get the query builder for the annotations (maybe filtered by IDs).
ProcessAnnotatedFile::getSVGAnnotation() — Method in class ProcessAnnotatedFile: Draw annotation as SVG
ProcessAnnotatedFile::getRectangleSvgAnnotation() — Method in class ProcessAnnotatedFile: Get an SVG rectangle element.
ProcessAnnotatedFile::getEllipseSvgAnnotation() — Method in class ProcessAnnotatedFile: Get an SVG ellipse element.
ProcessAnnotatedFile::getOrientedCoordinates() — Method in class ProcessAnnotatedFile: Determines position of coordinate
ProcessAnnotatedImage::generateFeatureVectors() — Method in class ProcessAnnotatedImage: Generates feature vectors for the specified annotations belonging to the file of this job. This method either creates new feature vector models or updates the existing ones for the annotations.
ProcessAnnotatedImage::getVipsImage() — Method in class ProcessAnnotatedImage: Get the vips image instance.
ProcessAnnotatedImage::getAnnotationQuery() — Method in class ProcessAnnotatedImage: Get the query builder for the annotations (maybe filtered by IDs).
ProcessAnnotatedVideo::getVideo() — Method in class ProcessAnnotatedVideo: Get the FFMpeg video instance.
ProcessAnnotatedVideo::getVideoFrame() — Method in class ProcessAnnotatedVideo: Get a video frame from a specific time as VipsImage object.
ProcessAnnotatedVideo::getAnnotationQuery() — Method in class ProcessAnnotatedVideo: Get the query builder for the annotations (maybe filtered by IDs).
AnnotationObserver::getSavedDispatch() — Method in class AnnotationObserver: Get the dispatched job on a saved event.
AnnotationObserver::getDeletingDispatch() — Method in class AnnotationObserver: Get the dispatched job on a deleting event.
ImageAnnotationObserver::getSavedDispatch() — Method in class ImageAnnotationObserver: Get the dispatched job on a saved event.
ImageAnnotationObserver::getDeletingDispatch() — Method in class ImageAnnotationObserver: Get the dispatched job on a deleting event.
VideoAnnotationObserver::getSavedDispatch() — Method in class VideoAnnotationObserver: Get the dispatched job on a saved event.
VideoAnnotationObserver::getDeletingDispatch() — Method in class VideoAnnotationObserver: Get the dispatched job on a deleting event.
Image::getLaserpointsAttribute() — Method in class Image: Return the dynamic attribute for the laser points information.
Image::getAreaAttribute() — Method in class Image: Get the area attribute from the laser point detection.
Image::getCountAttribute() — Method in class Image: Get the count attribute from the laser point detection.
Image::getMethodAttribute() — Method in class Image: Get the method attribute from the laser point detection.
Image::getDistanceAttribute() — Method in class Image: Get the distance attribute from the laser point detection.
Image::getPointsAttribute() — Method in class Image: Get the points attribute from the laser point detection.
Image::getErrorAttribute() — Method in class Image: Get the error attribute from the laser point detection.
Image::getMessageAttribute() — Method in class Image: Get the message attribute from the lase point detection.
Job::getLaserpointsForVolume() — Method in class Job: Collects all images of a volume that contain laser point annotations.
Job::gather() — Method in class Job: Perform the gather step.
$ ProcessDelphiJob#gatherFile — Property in class ProcessDelphiJob: Path to the output of the Delphi gather script.
ProcessImageManualJob::getLaserpointsForImage() — Method in class ProcessImageManualJob: Collects the laser point annotations of the given image.
DelphiGather::getOutputPath() — Method in class DelphiGather: Get the path to the temporary ouput file of the Delphi gather script.
GenerateEmbedding — Class in namespace Biigle\Modules\MagicSam\Jobs
GenerateEmbedding::generateEmbedding() — Method in class GenerateEmbedding: Generate the embedding.
GenericImage — Class in namespace Biigle\Modules\Maia
GenericImage::getId() — Method in class GenericImage: Get the image ID.
MaiaJobConvertingCandidatesController::get() — Method in class MaiaJobConvertingCandidatesController: Check whether a job to convert candidates is running
DeleteAnnotationPatches::getAnnotationsArray() — Method in class DeleteAnnotationPatches: Get the array of annotation IDs and their image ids.
DetectionJob::getGenericImages() — Method in class DetectionJob: Create GenericImage instances for the images of this job.
DetectionJob::getTmpDirPath() — Method in class DetectionJob: Get the path to the temporary directory.
GenerateAnnotationCandidateFeatureVectors — Class in namespace Biigle\Modules\Maia\Jobs
GenerateAnnotationCandidateFeatureVectors::getAnnotations() — Method in class GenerateAnnotationCandidateFeatureVectors: Get the training proposals or annotation candidates of the job.
GenerateAnnotationCandidatePatches — Class in namespace Biigle\Modules\Maia\Jobs
GenerateAnnotationFeatureVectors — Class in namespace Biigle\Modules\Maia\Jobs
GenerateAnnotationFeatureVectors::getAnnotations() — Method in class GenerateAnnotationFeatureVectors: Get the training proposals or annotation candidates of the job.
GenerateTrainingProposalFeatureVectors — Class in namespace Biigle\Modules\Maia\Jobs
GenerateTrainingProposalFeatureVectors::getAnnotations() — Method in class GenerateTrainingProposalFeatureVectors: Get the training proposals or annotation candidates of the job.
GenerateTrainingProposalPatches — Class in namespace Biigle\Modules\Maia\Jobs
NoveltyDetection::getTmpDirPath() — Method in class NoveltyDetection: Get the path to the temporary directory.
ObjectDetection::generateDataset() — Method in class ObjectDetection: Generate the training dataset for the object detection model.
ObjectDetection::getTmpDirPath() — Method in class ObjectDetection: Get the path to the temporary directory.
ObjectDetection::getKnowledgeTransferImages() — Method in class ObjectDetection: Create GenericImage instances for the images of the knowledge transfer volume.
PrepareAnnotationsJob::getAnnotationsQuery() — Method in class PrepareAnnotationsJob: Get the query for the annotations to convert.
PrepareExistingAnnotations::getAnnotationsQuery() — Method in class PrepareExistingAnnotations: Get the query for the annotations to convert.
PrepareKnowledgeTransfer::getDistanceScaleFactors() — Method in class PrepareKnowledgeTransfer: Get the scale factors based on distance to ground.
PrepareKnowledgeTransfer::getAreaScaleFactors() — Method in class PrepareKnowledgeTransfer: Get the scale factors based on image area.
PrepareKnowledgeTransfer::getAnnotationsQuery() — Method in class PrepareKnowledgeTransfer: Get the query for the annotations to convert.
ProcessNoveltyDetectedImage::getAnnotationQuery() — Method in class ProcessNoveltyDetectedImage: Get the query builder for the annotations (maybe filtered by IDs).
ProcessObjectDetectedImage::getAnnotationQuery() — Method in class ProcessObjectDetectedImage: Get the query builder for the annotations (maybe filtered by IDs).
MaiaAnnotation::getPoints() — Method in class MaiaAnnotation: Get the points array of the annotation.
MaiaAnnotation::getShape() — Method in class MaiaAnnotation: Get the shape of an annotation.
MaiaAnnotation::getFile() — Method in class MaiaAnnotation: Get the image/video, the annotation belongs to.
MaiaJob::getParamsAttribute() — Method in class MaiaJob: Get the configured parameters of this job.
MaiaJob::getErrorAttribute() — Method in class MaiaJob: Get the error information on this job (if any).
MaiaJob::getConvertingCandidatesAttribute() — Method in class MaiaJob: Determine whether a job to convert candidates is running.
JobStateChanged::getTitle() — Method in class JobStateChanged: Get the title for the state change.
JobStateChanged::getMessage() — Method in class JobStateChanged: Get the message for the state change.
NoveltyDetectionComplete::getTitle() — Method in class NoveltyDetectionComplete: Get the title for the state change.
NoveltyDetectionComplete::getMessage() — Method in class NoveltyDetectionComplete: Get the message for the state change.
NoveltyDetectionFailed::getTitle() — Method in class NoveltyDetectionFailed: Get the title for the state change.
NoveltyDetectionFailed::getMessage() — Method in class NoveltyDetectionFailed: Get the message for the state change.
ObjectDetectionComplete::getTitle() — Method in class ObjectDetectionComplete: Get the title for the state change.
ObjectDetectionComplete::getMessage() — Method in class ObjectDetectionComplete: Get the message for the state change.
ObjectDetectionFailed::getTitle() — Method in class ObjectDetectionFailed: Get the title for the state change.
ObjectDetectionFailed::getMessage() — Method in class ObjectDetectionFailed: Get the message for the state change.
QueriesExistingAnnotations::getExistingAnnotationsQuery() — Method in class QueriesExistingAnnotations: Get the query for the annotations to convert.
IfdoParser::getKnownMimeTypes() — Method in class IfdoParser: Get the MIME types that files known by this parser can have.
IfdoParser::getName() — Method in class IfdoParser: Get the name of the parser to show it to users selecting files.
IfdoParser::getIfdo() — Method in class IfdoParser
IfdoParser::getMetadata() — Method in class IfdoParser: Get a filled VolumeMetadata object based on the file.
EmailVerificationRequest::getUserResolver() — Method in class EmailVerificationRequest: Get the user resolver callback.
StoreReport::getOptions() — Method in class StoreReport: Get the options for the new report.
StoreVolumeReport::getOptions() — Method in class StoreVolumeReport: Get the options for the new report.
GenerateReportJob — Class in namespace Biigle\Modules\Reports\Jobs
Report::getSourceNameAttribute() — Method in class Report: Get the source name dynamically if the source still exists.
Report::getReportGenerator() — Method in class Report: Get the report generator for this report;.
Report::generate() — Method in class Report: Generate the report file for this report.
Report::getSubjectAttribute() — Method in class Report: Get the subject for this report.
Report::getNameAttribute() — Method in class Report: Get the name for this report.
Report::getFilenameAttribute() — Method in class Report: Get the filename for this report.
Report::getUrl() — Method in class Report: Get the URL to download the report.
Report::getStorageFilename() — Method in class Report: Get the filename of the report in storage (not the filename for download).
File::getPath() — Method in class File: Returns the path to the file.
AnnotationLocationReportGenerator::getProjectSources() — Method in class AnnotationLocationReportGenerator: Get sources for the sub-reports that should be generated for this project.
AnnotationReportGenerator::getName() — Method in class AnnotationReportGenerator: Get the report name.
AnnotationReportGenerator::getFilename() — Method in class AnnotationReportGenerator: Get the filename.
ImageLocationReportGenerator::getProjectSources() — Method in class ImageLocationReportGenerator: Get sources for the sub-reports that should be generated for this project.
ImageIfdoReportGenerator::getProjectSources() — Method in class ImageIfdoReportGenerator: Get sources for the sub-reports that should be generated for this project.
ImageLocationReportGenerator::getProjectSources() — Method in class ImageLocationReportGenerator: Get sources for the sub-reports that should be generated for this project.
ProjectImageReportGenerator::getProjectSources() — Method in class ProjectImageReportGenerator: Get sources for the sub-reports that should be generated for this project.
ProjectReportGenerator::generateReport() — Method in class ProjectReportGenerator: Generate the report.
ProjectReportGenerator::getProjectSources() — Method in class ProjectReportGenerator: Get sources for the sub-reports that should be generated for this project.
ProjectReportGenerator::getReportGenerator() — Method in class ProjectReportGenerator: Get the report generator.
ProjectVideoReportGenerator::getProjectSources() — Method in class ProjectVideoReportGenerator: Get sources for the sub-reports that should be generated for this project.
CsvReportGenerator::getName() — Method in class CsvReportGenerator: Get the report name.
CsvReportGenerator::getFilename() — Method in class CsvReportGenerator: Get the filename.
VideoIfdoReportGenerator::getProjectSources() — Method in class VideoIfdoReportGenerator: Get sources for the sub-reports that should be generated for this project.
ReportGenerator::get() — Method in class ReportGenerator: Get the report generator for the given type.
ReportGenerator::generate() — Method in class ReportGenerator: Generate the report.
ReportGenerator::generateReport() — Method in class ReportGenerator: Internal function to generate the report.
ReportGenerator::getName() — Method in class ReportGenerator: Get the report name.
ReportGenerator::getFilename() — Method in class ReportGenerator: Get the report filename.
ReportGenerator::getFullFilename() — Method in class ReportGenerator: Get the filename with extension.
ReportGenerator::getSiblingLabels() — Method in class ReportGenerator: Get all labels that belong to the label tree of the given label.
ReportGenerator::getOnlyLabels() — Method in class ReportGenerator: Returns the array of label ids to which this report should be restricted.
IfdoReportGenerator::generateReport() — Method in class IfdoReportGenerator: Generate the report.
IfdoReportGenerator::getUsers() — Method in class IfdoReportGenerator: Get all users who annotated in the volume.
IfdoReportGenerator::getLabels() — Method in class IfdoReportGenerator: Get all labels that were used in the volume.
IfdoReportGenerator::getIfdo() — Method in class IfdoReportGenerator: Get the iFDO object of the volume if it has any.
IfdoReportGenerator::getWormsUrn() — Method in class IfdoReportGenerator: Get the WoRMS URN for a label (if it has one).
IfdoReportGenerator::getGeometryName() — Method in class IfdoReportGenerator: Get an iFDO geometry name string for an annotation.
AbundanceReportGenerator::generateReport() — Method in class AbundanceReportGenerator: Generate the report.
AnnotationLocationReportGenerator::generateReport() — Method in class AnnotationLocationReportGenerator: Generate the report.
AnnotationReportGenerator::getName() — Method in class AnnotationReportGenerator: Get the report name.
AnnotationReportGenerator::getFilename() — Method in class AnnotationReportGenerator: Get the filename.
AreaReportGenerator::generateReport() — Method in class AreaReportGenerator: Generate the report.
BasicReportGenerator::generateReport() — Method in class BasicReportGenerator: Generate the report.
CocoReportGenerator::generateReport() — Method in class CocoReportGenerator: Generate the report.
CsvReportGenerator::generateReport() — Method in class CsvReportGenerator: Generate the report.
ExtendedReportGenerator::generateReport() — Method in class ExtendedReportGenerator: Generate the report.
FullReportGenerator::generateReport() — Method in class FullReportGenerator: Generate the report.
FullReportGenerator::getArea() — Method in class FullReportGenerator: Parses the image attrs JSON object to retrieve the computed area of the laserpoint detection.
ImageLocationReportGenerator::generateReport() — Method in class ImageLocationReportGenerator: Generate the report.
ImageIfdoReportGenerator::getUsers() — Method in class ImageIfdoReportGenerator: Get all users who annotated in the volume.
ImageIfdoReportGenerator::getLabels() — Method in class ImageIfdoReportGenerator: Get all labels that were used in the volume.
BasicReportGenerator::generateReport() — Method in class BasicReportGenerator: Generate the report.
CsvReportGenerator::generateReport() — Method in class CsvReportGenerator: Generate the report.
ImageLocationReportGenerator::generateReport() — Method in class ImageLocationReportGenerator: Generate the report.
CsvReportGenerator::getName() — Method in class CsvReportGenerator: Get the report name.
CsvReportGenerator::getFilename() — Method in class CsvReportGenerator: Get the filename.
CsvReportGenerator::generateReport() — Method in class CsvReportGenerator: Generate the report.
VideoIfdoReportGenerator::getUsers() — Method in class VideoIfdoReportGenerator: Get all users who annotated in the volume.
VideoIfdoReportGenerator::getLabels() — Method in class VideoIfdoReportGenerator: Get all labels that were used in the volume.
CsvReportGenerator::generateReport() — Method in class CsvReportGenerator: Generate the report.
VolumeReportGenerator::getVolumeLabels() — Method in class VolumeReportGenerator: Get all labels that are attached to the volume of this report (through project label trees).
VolumeReportGenerator::getAnnotationSession() — Method in class VolumeReportGenerator: Returns the annotation session this report should be restricted to.
VolumeReportGenerator::getAnnotationSessionName() — Method in class VolumeReportGenerator: Get the name of the annotation session if it exists.
RestrictsToExportArea::getSkipIds() — Method in class RestrictsToExportArea: Returns the annotation IDs to skip as outside of the volume export area.
Volume::getExportAreaAttribute() — Method in class Volume: Return the dynamic attribute for the export area.
Uuids::generateOutput() — Method in class Uuids: Generate the output that can be used as file to synchronize user UUIDs.
Controller::getQuery() — Method in class Controller: Get the query for the model to export.
Controller::getExport() — Method in class Controller: Get the new export instance.
Controller::getExportFilename() — Method in class Controller: Get the filename of the export archive.
LabelTreeExportController::getQuery() — Method in class LabelTreeExportController: Get the query for the model to export.
LabelTreeExportController::getExport() — Method in class LabelTreeExportController: Get the new export instance.
LabelTreeExportController::getExportFilename() — Method in class LabelTreeExportController: Get the filename of the export archive.
UserExportController::getQuery() — Method in class UserExportController: Get the query for the model to export.
UserExportController::getExport() — Method in class UserExportController: Get the new export instance.
UserExportController::getExportFilename() — Method in class UserExportController: Get the filename of the export archive.
VolumeExportController::getQuery() — Method in class VolumeExportController: Get the query for the model to export.
VolumeExportController::getExport() — Method in class VolumeExportController: Get the new export instance.
VolumeExportController::getExportFilename() — Method in class VolumeExportController: Get the filename of the export archive.
Export::getArchive() — Method in class Export: Generate the export archive file and return the temporary file path.
Export::getContent() — Method in class Export: Get the content of the export file. If a string, it is the path to the temporary file containing the content (like a CSV).
Export::getFileName() — Method in class Export: Get the name of the export file.
Export::getAdditionalExports() — Method in class Export: Get additional exports that should be included in the export archive.
ImageAnnotationExport::getContent() — Method in class ImageAnnotationExport: Get the content of the export file. If a string, it is the path to the temporary file containing the content (like a CSV).
ImageAnnotationExport::getFileName() — Method in class ImageAnnotationExport: Get the name of the export file.
ImageAnnotationLabelExport::getContent() — Method in class ImageAnnotationLabelExport: Get the content of the export file. If a string, it is the path to the temporary file containing the content (like a CSV).
ImageAnnotationLabelExport::getFileName() — Method in class ImageAnnotationLabelExport: Get the name of the export file.
ImageExport::getContent() — Method in class ImageExport: Get the content of the export file. If a string, it is the path to the temporary file containing the content (like a CSV).
ImageExport::getFileName() — Method in class ImageExport: Get the name of the export file.
ImageLabelExport::getContent() — Method in class ImageLabelExport: Get the content of the export file. If a string, it is the path to the temporary file containing the content (like a CSV).
ImageLabelExport::getFileName() — Method in class ImageLabelExport: Get the name of the export file.
LabelTreeExport::getContent() — Method in class LabelTreeExport: Get the content of the export file. If a string, it is the path to the temporary file containing the content (like a CSV).
LabelTreeExport::getFileName() — Method in class LabelTreeExport: Get the name of the export file.
LabelTreeExport::getAdditionalExports() — Method in class LabelTreeExport: Get additional exports that should be included in the export archive.
PublicLabelExport::getContent() — Method in class PublicLabelExport: Get the content of the export file. If a string, it is the path to the temporary file containing the content (like a CSV).
PublicLabelExport::getFileName() — Method in class PublicLabelExport: Get the name of the export file.
PublicLabelTreeExport::getContent() — Method in class PublicLabelTreeExport: Get the content of the export file. If a string, it is the path to the temporary file containing the content (like a CSV).
PublicLabelTreeExport::getFileName() — Method in class PublicLabelTreeExport: Get the name of the export file.
PublicLabelTreeExport::getAdditionalExports() — Method in class PublicLabelTreeExport: Get additional exports that should be included in the export archive.
UserExport::getContent() — Method in class UserExport: Get the content of the export file. If a string, it is the path to the temporary file containing the content (like a CSV).
UserExport::getFileName() — Method in class UserExport: Get the name of the export file.
VideoAnnotationExport::getContent() — Method in class VideoAnnotationExport: Get the content of the export file. If a string, it is the path to the temporary file containing the content (like a CSV).
VideoAnnotationExport::getFileName() — Method in class VideoAnnotationExport: Get the name of the export file.
VideoAnnotationLabelExport::getContent() — Method in class VideoAnnotationLabelExport: Get the content of the export file. If a string, it is the path to the temporary file containing the content (like a CSV).
VideoAnnotationLabelExport::getFileName() — Method in class VideoAnnotationLabelExport: Get the name of the export file.
VideoExport::getContent() — Method in class VideoExport: Get the content of the export file. If a string, it is the path to the temporary file containing the content (like a CSV).
VideoExport::getFileName() — Method in class VideoExport: Get the name of the export file.
VideoLabelExport::getContent() — Method in class VideoLabelExport: Get the content of the export file. If a string, it is the path to the temporary file containing the content (like a CSV).
VideoLabelExport::getFileName() — Method in class VideoLabelExport: Get the name of the export file.
VolumeExport::getContent() — Method in class VolumeExport: Get the content of the export file. If a string, it is the path to the temporary file containing the content (like a CSV).
VolumeExport::getFileName() — Method in class VolumeExport: Get the name of the export file.
VolumeExport::getAdditionalExports() — Method in class VolumeExport: Get additional exports that should be included in the export archive.
VolumeExport::getLabelTreeIds() — Method in class VolumeExport: Get the label tree IDs that are associated with the volumes of this export.
VolumeExport::getUserIds() — Method in class VolumeExport: Get the user IDs that are associated with the volumes of this export.
ArchiveManager::get() — Method in class ArchiveManager: Get the correct import instance for the import with the given token.
ArchiveManager::generateToken() — Method in class ArchiveManager: Generates a new token for an import.
LabelTreeImport::getImportLabelTrees() — Method in class LabelTreeImport: Get the contents of the label tree import file.
LabelTreeImport::getLabelTreeImportCandidates() — Method in class LabelTreeImport: Get label trees that can be imported and don't already exist.
LabelTreeImport::getLabelImportCandidates() — Method in class LabelTreeImport: Get labels of existing label trees that can be imported.
LabelTreeImport::getUserImportCandidates() — Method in class LabelTreeImport: Get users who might be implicitly imported along with a label tree.
LabelTreeImport::getUserImport() — Method in class LabelTreeImport: Get the user import instance that belongs to this import.
LabelTreeImport::getInsertLabelTrees() — Method in class LabelTreeImport: Get the array that can be used to insert the label trees that should be imported.
LabelTreeImport::getInsertUserIds() — Method in class LabelTreeImport: Get IDs of label tree admins that should be imported.
LabelTreeImport::getInsertLabels() — Method in class LabelTreeImport: Get the array that can be used to insert the labels that should be imported.
PublicLabelTreeImport::getImportLabelTree() — Method in class PublicLabelTreeImport: Get the contents of the label tree import file.
UserImport::getImportUsers() — Method in class UserImport: Get the contents of the user import file.
UserImport::getUserImportCandidates() — Method in class UserImport: Get users that can be imported.
UserImport::getConflicts() — Method in class UserImport: Get import users whose email address matches with an existing user but the UUID doesn't.
VolumeImport::getImportVolumes() — Method in class VolumeImport: Get the contents of the volume import file.
VolumeImport::getImportLabelTrees() — Method in class VolumeImport: Get the contents of the label tree import file.
VolumeImport::getVolumeImportCandidates() — Method in class VolumeImport: Get all volumes of this import augmented by the IDs of the users, label trees and labels that they require.
VolumeImport::getLabelTreeImportCandidates() — Method in class VolumeImport: Get all label trees that might have to be imported for the volumes.
VolumeImport::getLabelImportCandidates() — Method in class VolumeImport: Get all labels that might have to be imported for the volumes.
VolumeImport::getUserImportCandidates() — Method in class VolumeImport: Get the users who might have to be imported for the volumes.
VolumeImport::getUserImport() — Method in class VolumeImport: Get the user import instance that belongs to this import.
VolumeImport::getLabelTreeImport() — Method in class VolumeImport: Get the label tree import instance that belongs to this import.
VolumeImport::getCsvIdMap() — Method in class VolumeImport: Get a map of one CSV ID column to another.
VolumeImport::getRequiredEntities() — Method in class VolumeImport: Get the list of labels and users that whould need to be imported for each volume.
StoreUserDisk::getTypeValidationRules() — Method in class StoreUserDisk: Get additional validation rules for a storage disk type.
StoreUserDisk::getDiskOptions() — Method in class StoreUserDisk: Get the storage disk options from the input of this request.
UpdateUserDisk::getTypeValidationRules() — Method in class UpdateUserDisk: Get additional validation rules for a storage disk type.
UpdateUserDisk::getDiskOptions() — Method in class UpdateUserDisk: Get the storage disk options from the input of this request.
UserDisk::getConfigTemplate() — Method in class UserDisk: Return the storage disk config template associated with the disk type,
UserDisk::getStoreValidationRules() — Method in class UserDisk: Return the validation rules to create a disk with a specific type.
UserDisk::getUpdateValidationRules() — Method in class UserDisk: Return the validation rules to update a disk with a specific type.
UserDisk::getConfig() — Method in class UserDisk: Get the filesystem disk configuration array of this user disk.
StoreStorageRequestFile::getFilePath() — Method in class StoreStorageRequestFile: Get the full path where the file should be stored.
StorageRequest::getCreatedAtForHumansAttribute() — Method in class StorageRequest: Get the created_at_for_humans attribute
StorageRequest::getExpiresAtForHumansAttribute() — Method in class StorageRequest: Get the expires_at_for_humans attribute
StorageRequest::getFilesCountAttribute() — Method in class StorageRequest: Get the files_count attribute
StorageRequest::getSizeAttribute() — Method in class StorageRequest: Get the size attribute
StorageRequest::getPendingPath() — Method in class StorageRequest: Get the path to the directory or file of this request in the pending storage disk.
StorageRequest::getStoragePath() — Method in class StorageRequest: Get the path to the directory or file of this request in the storage disk.
User::getStorageQuotaAvailableAttribute() — Method in class User: Get the available storage quota of the user in bytes.
User::getStorageQuotaUsedAttribute() — Method in class User: Get the used storage quota of the user in bytes.
User::getStorageQuotaRemainingAttribute() — Method in class User: Get the remaining storage quota of the user in bytes.
RegistrationConfirmation::getDuplicateUsers() — Method in class RegistrationConfirmation: Determine possible duplicate users.
AnnotationPolicy::getFileModelTableName() — Method in class AnnotationPolicy: Get the file model table name of the annotation.
ProjectPolicy::getBaseQuery() — Method in class ProjectPolicy: Get the base query for all policy methods.
VolumePolicy::getBaseQuery() — Method in class VolumePolicy: Get the base query for all policy methods.
Project::guests() — Method in class Project: All members of this project with the guest role.
Project::getThumbnailUrlAttribute() — Method in class Project: URL to a unique thumbnail image for this project.
ProjectInvitation::getExpiresAtForHumansAttribute() — Method in class ProjectInvitation: The expires_at_for_humans.
CheckQueues::getLastReportCacheKey() — Method in class CheckQueues: Get the cache key for the stored time of the last notification for a queue and connection.
CheckQueues::getFirstAlertCacheKey() — Method in class CheckQueues: Get the cache key for the stored time of the first alert registered for a queue and connection.
Role::guest() — Method in class Role
Role::guestId() — Method in class Role
GreaterThan — Class in namespace Biigle\Rules
ApiGuard::getTokenForRequest() — Method in class ApiGuard: Get the token for the current request.
WormsAdapter::getSoapClient() — Method in class WormsAdapter: Get the SOAP client instance to use for requests.
Annotation::getInsertData() — Method in class Annotation: Get the array of metadata that can be used for Model::insert();
CsvParser::getKnownMimeTypes() — Method in class CsvParser: Get the MIME types that files known by this parser can have.
CsvParser::getName() — Method in class CsvParser: Get the name of the parser to show it to users selecting files.
CsvParser::getMetadata() — Method in class CsvParser: Get a filled VolumeMetadata object based on the file.
CsvParser::getCsvIterator() — Method in class CsvParser
CsvParser::getKeyMap() — Method in class CsvParser
FileMetadata::getInsertData() — Method in class FileMetadata: Get the array of metadata that can be used for Model::insert();
FileMetadata::getAnnotations() — Method in class FileMetadata
FileMetadata::getFileLabels() — Method in class FileMetadata
FileMetadata::getFileLabelLabels() — Method in class FileMetadata
FileMetadata::getAnnotationLabels() — Method in class FileMetadata
FileMetadata::getUsers() — Method in class FileMetadata
FileMetadata::getAnnotationLabelAndUsers() — Method in class FileMetadata
FileMetadata::getFileLabelLabelAndUsers() — Method in class FileMetadata
ImageAnnotation::getInsertData() — Method in class ImageAnnotation: Get the array of metadata that can be used for Model::insert();
ImageCsvParser::getMetadata() — Method in class ImageCsvParser: Get a filled VolumeMetadata object based on the file.
ImageMetadata::getInsertData() — Method in class ImageMetadata: Get the array of metadata that can be used for Model::insert();
MetadataParser::getKnownMimeTypes() — Method in class MetadataParser: Get the MIME types that files known by this parser can have.
MetadataParser::getName() — Method in class MetadataParser: Get the name of the parser to show it to users selecting files.
MetadataParser::getMetadata() — Method in class MetadataParser: Get a filled VolumeMetadata object based on the file.
MetadataParser::getFileObject() — Method in class MetadataParser
VideoAnnotation::getInsertData() — Method in class VideoAnnotation: Get the array of metadata that can be used for Model::insert();
VideoCsvParser::getMetadata() — Method in class VideoCsvParser: Get a filled VolumeMetadata object based on the file.
VideoMetadata::getFrames() — Method in class VideoMetadata
VideoMetadata::getInsertData() — Method in class VideoMetadata: Get the array of metadata that can be used for Model::insert();
VideoMetadata::getInsertDataPlain() — Method in class VideoMetadata: Get the metadata insert array if no frames are present.
VideoMetadata::getInsertDataFrames() — Method in class VideoMetadata: Get the metadata insert array from all frames, sorted by taken_at.
VolumeMetadata::getFiles() — Method in class VolumeMetadata
VolumeMetadata::getFile() — Method in class VolumeMetadata
VolumeMetadata::getAnnotationLabels() — Method in class VolumeMetadata: The returned array is indexed by label IDs.
VolumeMetadata::getFileLabels() — Method in class VolumeMetadata: The returned array is indexed by label IDs.
VolumeMetadata::getUsers() — Method in class VolumeMetadata: Get all users associated with annotations and/or file labels.
VolumeMetadata::getMatchingUsers() — Method in class VolumeMetadata
VolumeMetadata::getMatchingLabels() — Method in class VolumeMetadata
Modules::getViewMixins() — Method in class Modules: Returns all mixins for a view that were registered by modules.
Modules::getMixins() — Method in class Modules
Modules::getControllerMixins() — Method in class Modules: Returns all mixins for a controller that were registered by modules.
Modules::getInstalledModules() — Method in class Modules: Returns information about all installed BIIGLE modules
Modules::getApidocPaths() — Method in class Modules: Get the registered apidoc paths of the modules.
FilesystemManager::getConfig() — Method in class FilesystemManager: {@inheritdoc}
HasJsonAttributes::getJsonAttr() — Method in class HasJsonAttributes: Get a dynamic JSON attribute.
HasMetadataFile::getMetadata() — Method in class HasMetadataFile
User::getIsGlobalAdminAttribute() — Method in class User: Determines if the user has the global admin role.
User::getSettings() — Method in class User: Get settings of a specific key.
User::getSettingsAttribute() — Method in class User: Get the settings array.
User::getIsInSuperUserModeAttribute() — Method in class User: Determines if the user is currently in Super User Mode.
User::getCanReviewAttribute() — Method in class User: Determines if the user can review e.g. new user registrations (without being super user).
Video::getThumbnailAttribute() — Method in class Video: Thumbnail string of this video. Use with the thumbnail_url helper function.
Video::getThumbnailUrlAttribute() — Method in class Video: URL to the thumbnail of this video.
Video::getThumbnailsAttribute() — Method in class Video: Thumbnails array of this video. Use with the thumbnail_url helper function.
Video::getThumbnailsUrlAttribute() — Method in class Video: URLs to the thumbnails of this video.
Video::getErrorAttribute() — Method in class Video: Get the error attribute.
Video::getTakenAtAttribute() — Method in class Video: Get the taken_at timestamps.
VideoAnnotation::getFileIdAttribute() — Method in class VideoAnnotation: Get the file_id attribute
VideoAnnotation::getInterpolationPoints() — Method in class VideoAnnotation: Get the points of this annotation prepared for interpolation.
VideoLabel::getFileIdAttribute() — Method in class VideoLabel: Get the file ID attribute.
Volume::getActiveAnnotationSession() — Method in class Volume: Returns the active annotation session of this volume for the given user.
Volume::getThumbnailAttribute() — Method in class Volume: An image that can be used as unique thumbnail for this volume.
Volume::getThumbnailUrlAttribute() — Method in class Volume: URL to the thumbnail image of this volume.
Volume::getThumbnailsAttribute() — Method in class Volume: Several images or videos that can be used for the preview thumbnail of a volume.
Volume::getThumbnailsUrlAttribute() — Method in class Volume: URLs to the thumbnail images of this volume.
Volume::getCreatingAsyncAttribute() — Method in class Volume: Get the creating_async attribute of this volume.
Volume::getThumbnailsCacheKey() — Method in class Volume: Get the cache key for volume thumbnails.
Volume::getGeoInfoCacheKey() — Method in class Volume: Get the cache key for volume geo info.
VolumeFile::getUrlAttribute() — Method in class VolumeFile: Adds the url attribute to the model. The url is the absolute path to the original file.
VolumeFile::getUrl() — Method in class VolumeFile: Get the file URL.
VolumeFile::getMetadataAttribute() — Method in class VolumeFile: Get the metadata attribute.
VolumeFile::getWidthAttribute() — Method in class VolumeFile: Get the width attribute.
VolumeFile::getHeightAttribute() — Method in class VolumeFile: Get the height attribute.
VolumeFile::getSizeAttribute() — Method in class VolumeFile: Get the size attribute.
VolumeFile::getMimeTypeAttribute() — Method in class VolumeFile: Get the mimeType attribute.
VolumeFile::getThumbnailUrlAttribute() — Method in class VolumeFile: URL to the thumbnail of this file.
VolumeFileLabel::getFileIdAttribute() — Method in class VolumeFileLabel: Get the file ID attribute.

H

$ Annotation#hidden — Property in class Annotation: The attributes excluded from the model's JSON form.
$ ApiToken#hidden — Property in class ApiToken: The attributes excluded from the model's JSON form.
Apidoc::handle() — Method in class Apidoc: Handle the command.
MigrateTiledImages::handle() — Method in class MigrateTiledImages: Handle the command.
NewUser::handle() — Method in class NewUser: Handle the command.
PruneNotifications::handle() — Method in class PruneNotifications: Execute the console command.
UpdateVideoMetadata::handle() — Method in class UpdateVideoMetadata: Handle the command.
UpdateVolumeUrls::handle() — Method in class UpdateVolumeUrls: Handle the command.
Handler — Class in namespace Biigle\Exceptions
$ FederatedSearchInstance#hidden — Property in class FederatedSearchInstance: The attributes excluded from the model's JSON form.
PruneFileCache::handle() — Method in class PruneFileCache: Execute the console command.
ClearFileCache::handle() — Method in class ClearFileCache: Handle the event.
HeartbeatController — Class in namespace Biigle\Http\Controllers\Views
RedirectIfAuthenticated::handle() — Method in class RedirectIfAuthenticated: Handle an incoming request.
SessionOnly::handle() — Method in class SessionOnly: Handle an incoming request.
TrustHosts::hosts() — Method in class TrustHosts: Get the host patterns that should be trusted.
$ TrustProxies#headers — Property in class TrustProxies: The headers that should be used to detect proxies.
UpdateUserActivity::handle() — Method in class UpdateUserActivity: Handle an outgoing response.
$ Image#hidden — Property in class Image: The attributes hidden in the model's JSON form.
$ ImageAnnotationLabel#hidden — Property in class ImageAnnotationLabel: The attributes excluded from the model's JSON form.
CloneImagesOrVideos::handle() — Method in class CloneImagesOrVideos
CreateNewImagesOrVideos::handle() — Method in class CreateNewImagesOrVideos: Execute the job.
DeleteVolume::handle() — Method in class DeleteVolume: Execute the job.
GenerateFederatedSearchIndex::handle() — Method in class GenerateFederatedSearchIndex: Execute the job.
ImportVolumeMetadata::handle() — Method in class ImportVolumeMetadata
MigrateTiledImage::handle() — Method in class MigrateTiledImage: Execute the job.
$ ProcessNewImage#height — Property in class ProcessNewImage: The desired thumbnail height.
ProcessNewImage::handle() — Method in class ProcessNewImage: Execute the job.
ProcessNewImage::hasTakenAtInfo() — Method in class ProcessNewImage: Check if an exif array contains a creation date.
ProcessNewImage::hasGpsInfo() — Method in class ProcessNewImage: Check if an exif array contains GPS information.
ProcessNewImage::hasExtendedGpsInfo() — Method in class ProcessNewImage: Check if an exif array contains even more GPS information.
ProcessNewImage::hasGpsImgDirInfo() — Method in class ProcessNewImage: Check if an exif array contains GPSImgDirection information.
ProcessNewImage::hasSubjectAreaInfo() — Method in class ProcessNewImage: Check if an exif array contains SubjectArea information.
ProcessNewVideo::handle() — Method in class ProcessNewVideo: Execute the job.
ProcessNewVideo::handleFile() — Method in class ProcessNewVideo: Process a cached video file.
ProcessNewVolumeFiles::handle() — Method in class ProcessNewVolumeFiles: Execute the job.
TileSingleImage::handle() — Method in class TileSingleImage: Execute the job.
TrackObject::handle() — Method in class TrackObject: Execute the job.
UpdateFederatedSearchIndex::handle() — Method in class UpdateFederatedSearchIndex: Execute the job.
UpdateVolumeMetadata::handle() — Method in class UpdateVolumeMetadata
$ Label#hidden — Property in class Label: The attributes hidden from the model's JSON form.
$ LabelTree#hidden — Property in class LabelTree: The attributes hidden from the model's JSON form.
CleanupImageThumbnails::handle() — Method in class CleanupImageThumbnails: Handle the event.
CleanupImageTiles::handle() — Method in class CleanupImageTiles: Handle the event.
CleanupVideoThumbnails::handle() — Method in class CleanupVideoThumbnails: Handle the event.
Publish::handle() — Method in class Publish: Execute the command.
Publish::handle() — Method in class Publish: Execute the command.
ComputeNewSequence::handle() — Method in class ComputeNewSequence: Execute the job.
ImagesCreatedListener::handle() — Method in class ImagesCreatedListener: Handle the event.
Config::handle() — Method in class Config: Execute the command.
Publish::handle() — Method in class Publish: Execute the command.
CountUniqueUser::handle() — Method in class CountUniqueUser: Execute the command.
CountUser::handle() — Method in class CountUser: Execute the command.
DetermineStorageUsage::handle() — Method in class DetermineStorageUsage: Execute the command.
EnsureTokenIsValid::handle() — Method in class EnsureTokenIsValid: Handle an incoming request.
Config::handle() — Method in class Config: Execute the command.
GenerateMissing::handle() — Method in class GenerateMissing: Execute the command.
GenerateMissing::handleImageAnnotations() — Method in class GenerateMissing: Check image annnotation patches
GenerateMissing::handleVideoAnnotations() — Method in class GenerateMissing: Check video annnotation patches
GenerateMissing::handleAnnotations() — Method in class GenerateMissing
InitializeFeatureVectors::handle() — Method in class InitializeFeatureVectors: Execute the command.
MigratePatchStorage::handle() — Method in class MigratePatchStorage: Execute the command.
Publish::handle() — Method in class Publish: Execute the command.
ApplyLargoSession::handle() — Method in class ApplyLargoSession: Execute the job.
ApplyLargoSession::handleImageAnnotations() — Method in class ApplyLargoSession: Process the image annotations.
ApplyLargoSession::handleVideoAnnotations() — Method in class ApplyLargoSession: Process the video annotations.
CopyAnnotationFeatureVector::handle() — Method in class CopyAnnotationFeatureVector: Execute the job.
InitializeFeatureVectorChunk::handle() — Method in class InitializeFeatureVectorChunk
ProcessAnnotatedFile::handle() — Method in class ProcessAnnotatedFile: Execute the job.
ProcessAnnotatedFile::handleFile() — Method in class ProcessAnnotatedFile: Handle a single file.
ProcessAnnotatedImage::handleFile() — Method in class ProcessAnnotatedImage: Handle a single file.
ProcessAnnotatedVideo::handleFile() — Method in class ProcessAnnotatedVideo: Handle a single file.
RemoveAnnotationPatches::handle() — Method in class RemoveAnnotationPatches: Execute the job.
AttachLabelListener::handle() — Method in class AttachLabelListener
ImagesCleanupListener::handle() — Method in class ImagesCleanupListener: Handle the event.
VideosCleanupListener::handle() — Method in class VideosCleanupListener: Handle the event.
VolumeClonedListener::handle() — Method in class VolumeClonedListener
Config::handle() — Method in class Config: Execute the command.
Publish::handle() — Method in class Publish: Execute the command.
Job::handle() — Method in class Job: Execute the job.
ProcessDelphiJob::handle() — Method in class ProcessDelphiJob: Execute the job.
ProcessImageDelphiJob::handle() — Method in class ProcessImageDelphiJob: Execute the job.
ProcessImageManualJob::handle() — Method in class ProcessImageManualJob: Execute the job.
ProcessManualJob::handle() — Method in class ProcessManualJob: Execute the job.
ProcessVolumeDelphiJob::handle() — Method in class ProcessVolumeDelphiJob: Execute the job.
Volume::hasDetectedLaserpoints() — Method in class Volume: Determines whether there are images with automatically detected laser points in this volume.
PruneOldEmbeddings::handle() — Method in class PruneOldEmbeddings: Execute the command.
GenerateEmbedding::handle() — Method in class GenerateEmbedding: Handle the job.
MigratePatchStorage::handle() — Method in class MigratePatchStorage: Execute the command.
Publish::handle() — Method in class Publish: Execute the command.
StoreMaiaJob::hasNoExistingAnnotations() — Method in class StoreMaiaJob: Determine if there are existing annotations that can be used as training data.
StoreMaiaJob::hasNoKnowledgeTransferAnnotations() — Method in class StoreMaiaJob: Determine if there are existing annotations in the volume chosen for knowledge transfer.
StoreMaiaJob::hasSmallImages() — Method in class StoreMaiaJob: Determine whether the volume contains images smaller than 512px.
ConvertAnnotationCandidates::handle() — Method in class ConvertAnnotationCandidates: Handle the job.
DeleteAnnotationPatchChunk::handle() — Method in class DeleteAnnotationPatchChunk: Handle the event.
DeleteAnnotationPatches::handle() — Method in class DeleteAnnotationPatches: Handle the event.
GenerateAnnotationCandidatePatches::handle() — Method in class GenerateAnnotationCandidatePatches
GenerateAnnotationFeatureVectors::handle() — Method in class GenerateAnnotationFeatureVectors: Handle the job.
GenerateTrainingProposalPatches::handle() — Method in class GenerateTrainingProposalPatches
JobFailure::handle() — Method in class JobFailure: Execute the job
NotifyNoveltyDetectionComplete::handle() — Method in class NotifyNoveltyDetectionComplete: Handle the job.
NotifyObjectDetectionComplete::handle() — Method in class NotifyObjectDetectionComplete: Handle the job.
NoveltyDetection::handle() — Method in class NoveltyDetection: Execute the job
ObjectDetection::handle() — Method in class ObjectDetection: Execute the job
PrepareAnnotationsJob::hasAnnotations() — Method in class PrepareAnnotationsJob: Determine if there are any annotations to convert.
PrepareExistingAnnotations::handle() — Method in class PrepareExistingAnnotations: Execute the job.
PrepareKnowledgeTransfer::handle() — Method in class PrepareKnowledgeTransfer: Execute the job.
DispatchMaiaJob::handle() — Method in class DispatchMaiaJob: Handle the event.
DispatchObjectDetection::handle() — Method in class DispatchObjectDetection: Handle the event.
PrepareDeleteAnnotationPatches::handle() — Method in class PrepareDeleteAnnotationPatches: Handle the event.
PruneTrainingProposalFeatureVectors::handle() — Method in class PruneTrainingProposalFeatureVectors: Handle the event.
PruneTrainingProposalPatches::handle() — Method in class PruneTrainingProposalPatches: Handle the event.
MaiaJob::hasFailed() — Method in class MaiaJob: Determine if the job failed during novelty detection or object detection.
PruneStaleSubscribers::handle() — Method in class PruneStaleSubscribers: Execute the command.
Publish::handle() — Method in class Publish: Execute the command.
GenerateReportJob::handle() — Method in class GenerateReportJob: Execute the job.
$ File#handle — Property in class File: File handle.
IfdoReportGenerator::hasIfdo() — Method in class IfdoReportGenerator: Determine if the volume has a iFDO metadata file.
Prune::handle() — Method in class Prune: Execute the command.
Publish::handle() — Method in class Publish: Execute the command.
Uuids::handle() — Method in class Uuids: Execute the command.
Uuids::handleSync() — Method in class Uuids: Read the input file and perform interactive synchronization of user UUIDs.
ImportAdminController::hideUserCredentials() — Method in class ImportAdminController: Hides sensitive user credentials that should not be returned to the frontend.
PostprocessVolumeImport::handle() — Method in class PostprocessVolumeImport: Execute the job.
ArchiveManager::has() — Method in class ArchiveManager: Determine if the files of an import with tthe given token exist.
CheckExpiredUserDisks::handle() — Method in class CheckExpiredUserDisks: Execute the command.
PruneExpiredUserDisks::handle() — Method in class PruneExpiredUserDisks: Execute the command.
CheckExpiredStorageRequests::handle() — Method in class CheckExpiredStorageRequests: Execute the command.
PruneExpiredStorageRequests::handle() — Method in class PruneExpiredStorageRequests: Execute the command.
PruneStaleStorageRequests::handle() — Method in class PruneStaleStorageRequests: Execute the command.
ApproveStorageRequest::handle() — Method in class ApproveStorageRequest: Execute the job.
AssembleChunkedFile::handle() — Method in class AssembleChunkedFile: Execute the job.
DeleteStorageRequestDirectory::handle() — Method in class DeleteStorageRequestDirectory: Execute the job.
DeleteStorageRequestFile::handle() — Method in class DeleteStorageRequestFile: Execute the job.
$ StorageRequestFile#hidden — Property in class StorageRequestFile: The attributes that should be hidden for arrays.
$ PendingVolume#hidden — Property in class PendingVolume: The attributes that should be hidden for arrays.
$ Project#hidden — Property in class Project: The attributes hidden from the model's JSON form.
Project::hasGeoInfo() — Method in class Project: Check if the project has volumes which have some images with GPS coordinates.
Handle — Class in namespace Biigle\Rules
FileMetadata::hasAnnotations() — Method in class FileMetadata
FileMetadata::hasFileLabels() — Method in class FileMetadata
ParserFactory::has() — Method in class ParserFactory: Check if the metadata parser exists for the given type.
VolumeMetadata::hasAnnotations() — Method in class VolumeMetadata
VolumeMetadata::hasFileLabels() — Method in class VolumeMetadata
HasConstantInstances — Class in namespace Biigle\Traits: Some models have fixed, "constant" instances. An example is the Role model, which may have e.g. the roles "admin" and "user". These are always the same and do not change.
HasJsonAttributes — Class in namespace Biigle\Traits
HasMetadataFile — Class in namespace Biigle\Traits
HasMetadataFile::hasMetadata() — Method in class HasMetadataFile
HasPointsAttribute — Class in namespace Biigle\Traits
$ User#hidden — Property in class User: The attributes hidden from the model's JSON form.
$ Video#hidden — Property in class Video: The attributes hidden from the model's JSON form.
Video::hasBeenProcessed() — Method in class Video: Determine whether the (new) video has been processed.
$ Volume#hidden — Property in class Volume: The attributes hidden from the model's JSON form.
Volume::hasConflictingAnnotationSession() — Method in class Volume: Check if the given annotation session is in conflict with existing ones.
Volume::hasGeoInfo() — Method in class Volume: Check if the volume has some images with GPS coordinates.
Volume::hasTiledImages() — Method in class Volume: Check if the there are tiled images in this volume.

I

$ Annotation#id — Property in class Annotation
$ AnnotationLabel#id — Property in class AnnotationLabel
AnnotationSession::imageAnnotations() — Method in class AnnotationSession: Get a query for all image annotations that belong to this session.
ImagesDeleted — Class in namespace Biigle\Events
FederatedSearchModel::instance() — Method in class FederatedSearchModel: The instance, this model belongs to.
FileCache::isRemote() — Method in class FileCache: Determine if an file is remote, i.e. served by a public webserver.
AnnotationController::index() — Method in class AnnotationController: List the IDs of files having one or more annotations.
AnnotationUserController::index() — Method in class AnnotationUserController: List the IDs of images having one or more annotations of the specified user.
VolumeAnnotationLabelController::index() — Method in class VolumeAnnotationLabelController: Get all annotation labels that were used in a volume.
VolumeImageAreaController::index() — Method in class VolumeImageAreaController: Get the area of the images of a volume in m².
ApiTokenController::index() — Method in class ApiTokenController: Shows a list of all API tokens belonging to the authenticated user.
FederatedSearchIndexController::index() — Method in class FederatedSearchIndexController: Show the federated search index.
ImageAnnotationBulkController — Class in namespace Biigle\Http\Controllers\Api
ImageAnnotationController — Class in namespace Biigle\Http\Controllers\Api
ImageAnnotationController::index() — Method in class ImageAnnotationController: Shows a list of all annotations of the specified image.
ImageAnnotationLabelController — Class in namespace Biigle\Http\Controllers\Api
ImageAnnotationLabelController::index() — Method in class ImageAnnotationLabelController: Shows all labels of the specified annotation.
ImageController — Class in namespace Biigle\Http\Controllers\Api
ImageLabelController — Class in namespace Biigle\Http\Controllers\Api
LabelTreeController::index() — Method in class LabelTreeController: Shows all label trees the user has access to.
MediaTypeController::index() — Method in class MediaTypeController: Shows all media types.
ProjectController::index() — Method in class ProjectController: Shows all projects that are accessible by the requesting user.
ProjectLabelTreeController::index() — Method in class ProjectLabelTreeController: Display all label trees used by the specified project.
ProjectUserController::index() — Method in class ProjectUserController: Displays the users belonging to the specified project.
ProjectVolumeController::index() — Method in class ProjectVolumeController: Shows a list of all volumes belonging to the specified project.
ProjectsAttachableVolumesController::index() — Method in class ProjectsAttachableVolumesController: Shows all volumes that can be attached to the project by the requesting user.
RoleController::index() — Method in class RoleController: Shows all roles.
ShapeController::index() — Method in class ShapeController: Shows all shapes.
UserController::index() — Method in class UserController: Shows a list of all users.
UserPinnedProjectController::index() — Method in class UserPinnedProjectController: Shows all pinned projects of the user.
UserRegistrationController::isAdminConfirmationEnabled() — Method in class UserRegistrationController: Determines if the user registration confirmation by admins is enabled.
VideoAnnotationController::index() — Method in class VideoAnnotationController: Shows a list of all annotations of the specified video.
VisibilityController::index() — Method in class VisibilityController: Shows all visibilities.
VolumeAnnotationSessionController::index() — Method in class VolumeAnnotationSessionController: Shows a list of all annotation sessions of the specified volume.
VolumeController::index() — Method in class VolumeController: Shows all volumes the user has access to.
VolumeFileController::index() — Method in class VolumeFileController: List the image/video IDs of the specified volume.
VolumeFileLabelController::index() — Method in class VolumeFileLabelController: Shows all labels of the specified file.
BrowserController::indexDirectories() — Method in class BrowserController: List directories in a storage disk.
BrowserController::indexImages() — Method in class BrowserController: List images in a storage disk.
BrowserController::indexVideos() — Method in class BrowserController: List videos in a storage disk.
BrowserController::indexFiles() — Method in class BrowserController: List files filtered by a regex in a storage disk.
FileLabelsController::index() — Method in class FileLabelsController: Get the labels for each image/video
FilenamesController::index() — Method in class FilenamesController: Get all filenames of a volume.
AnnotationLabelController::index() — Method in class AnnotationLabelController: List the IDs of files having one or more annotations with the specified label.
AnyFileLabelController::index() — Method in class AnyFileLabelController: List the IDs of images/videos having one or more labels attached.
FileLabelController::index() — Method in class FileLabelController: List the IDs of images/videos having the specified label attached.
FileLabelUserController::index() — Method in class FileLabelUserController: List the IDs of images/videos having one or more labels attached by the specified user.
FilenameController::index() — Method in class FilenameController: List the IDs of files with a filename matching the given pattern.
StatisticsController::index() — Method in class StatisticsController: Provides the statistics-data for a specific Volume.
UsedFileLabelsController::index() — Method in class UsedFileLabelsController: Get all file labels that were used in a volume.
UserController::index() — Method in class UserController: List the users of a volume.
RegisterController::isRegistrationDisabled() — Method in class RegisterController: Determines if the user registration mechansim is disabled.
RegisterController::isAdminConfirmationEnabled() — Method in class RegisterController: Determines if the user registration confirmation by admins is enabled.
Controller::isAutomatedRequest() — Method in class Controller: Determines if the request was done by an automated script (with API token or ajax).
AnnouncementsController::index() — Method in class AnnouncementsController: Shows the admin announcements page.
FederatedSearchController::index() — Method in class FederatedSearchController: Show the federated search admin page.
IndexController — Class in namespace Biigle\Http\Controllers\Views\Admin
LabelTreesController::index() — Method in class LabelTreesController: Show the label tree admin page.
LogsController::index() — Method in class LogsController: Shows the available logfiles.
ImageAnnotationController — Class in namespace Biigle\Http\Controllers\Views\Annotations
DashboardController::index() — Method in class DashboardController: Show the application dashboard to the user.
DashboardController::indexDashboard() — Method in class DashboardController: Show the dashboard for a logged in user.
DashboardController::indexLandingPage() — Method in class DashboardController: Show the landing page if no user is authenticated.
ImprintController — Class in namespace Biigle\Http\Controllers\Views
LabelTreeMergeController::index() — Method in class LabelTreeMergeController: Show the label tree merge index page.
LabelTreesController::index() — Method in class LabelTreesController: Show the label tree list.
ManualController::index() — Method in class ManualController: Show the application manual to the user.
NotificationsController::index() — Method in class NotificationsController: Shows the notification center.
ProjectsController::index() — Method in class ProjectsController: Shows the project index page.
SearchController::index() — Method in class SearchController: Shows the search page.
SettingsController::index() — Method in class SettingsController: Redirects to the profile settings.
ImageController — Class in namespace Biigle\Http\Controllers\Views\Volumes
ImageController::index() — Method in class ImageController: Shows the image index page.
VolumeController::index() — Method in class VolumeController: Shows the volume index page.
UpdateUserActivity::inExceptArray() — Method in class UpdateUserActivity: Determine if the request has a URI that should not update the user activity.
$ StoreImageAnnotation#image — Property in class StoreImageAnnotation: The image on which the annotation should be created.
$ StoreImageAnnotations#imageIds — Property in class StoreImageAnnotations: Unique image IDs of this request.
$ StoreImageAnnotations#images — Property in class StoreImageAnnotations: The images on which the annotations should be created.
$ StoreLabelTreeUser#isGlobalGuest — Property in class StoreLabelTreeUser: Determines whether the user to be attached is a global guest.
$ UpdateFederatedSearchInstance#instance — Property in class UpdateFederatedSearchInstance: The instance that should be updated.
$ UpdateLabelTreeUser#isGlobalGuest — Property in class UpdateLabelTreeUser: Determines whether the user to be attached is a global guest.
Ifdo — Class in namespace Biigle\Ifdo
Ifdo::isValid() — Method in class Ifdo
Image — Class in namespace Biigle: This model stores information on an image file in the file system.
ImageAnnotation — Class in namespace Biigle: An image annotation is a region of an image that can be labeled by the users.
ImageAnnotation::image() — Method in class ImageAnnotation: The image, this annotation belongs to.
ImageAnnotationLabel — Class in namespace Biigle: Pivot object for the connection between ImageAnnotation and Label.
ImageLabel — Class in namespace Biigle
ImageLabel::image() — Method in class ImageLabel: The image, this image label belongs to.
ImportVolumeMetadata — Class in namespace Biigle\Jobs
$ ImportVolumeMetadata#insertChunkSize — Property in class ImportVolumeMetadata: The number of annotation (label) rows to insert in one chunk.
ImportVolumeMetadata::insertAnnotations() — Method in class ImportVolumeMetadata: Insert metadata annotations of a file into the database.
ImportVolumeMetadata::insertAnnotationChunk() — Method in class ImportVolumeMetadata
ImportVolumeMetadata::insertFileLabels() — Method in class ImportVolumeMetadata: Insert metadata file labels of a file into the database.
$ ProcessNewImage#image — Property in class ProcessNewImage: The image to process
$ TileSingleImage#image — Property in class TileSingleImage: The image to generate tiles for.
$ UpdateFederatedSearchIndex#instance — Property in class UpdateFederatedSearchIndex: The instance from which the index should be updated.
$ Label#id — Property in class Label
Label::isUsed() — Method in class Label: Determines if the label is used anywhere (e.g. attached to an annotation).
LogManager::isFile() — Method in class LogManager: Determine whether logs are written to files.
LogManager::isRedis() — Method in class LogManager: Determine whether logs are written to files.
MediaType::image() — Method in class MediaType
MediaType::imageId() — Method in class MediaType
ImageController — Class in namespace Biigle\Modules\Ananas\Http\Controllers\Api
AnnotationAssistanceRequestController::index() — Method in class AnnotationAssistanceRequestController: Show the list of all assistance requests of the user.
StoreAnnotationAssistanceRequest::invalidLabels() — Method in class StoreAnnotationAssistanceRequest: Check if the user attempts to use invalid labels for the request.
$ LsloginId#incrementing — Property in class LsloginId: Indicates if the model's ID is auto-incrementing.
VolumeColorSortSequenceController::index() — Method in class VolumeColorSortSequenceController: List all color sort sequence colors of the specified volume.
ImagesCreatedListener — Class in namespace Biigle\Modules\ColorSort\Listeners
ImageObserver — Class in namespace Biigle\Modules\ColorSort\Observers
FileCoordinatesController::index() — Method in class FileCoordinatesController: Get all files of a volume together with coordinate-values.
ProjectImageAnnotationLabelController::index() — Method in class ProjectImageAnnotationLabelController: List the IDs of images of a project having one or more annotations with the specified label.
InitializeFeatureVectors — Class in namespace Biigle\Modules\Largo\Console\Commands
ImageAnnotationLabelFeatureVectorFactory — Class in namespace Biigle\Modules\Largo\Database\Factories
$ LargoSessionFailed#id — Property in class LargoSessionFailed: The ID of the Largo session
$ LargoSessionSaved#id — Property in class LargoSessionSaved: The ID of the Largo session
ImageAnnotationsController — Class in namespace Biigle\Modules\Largo\Http\Controllers\Api\Labels
ImageAnnotationsController::index() — Method in class ImageAnnotationsController: Show image annotations of a label.
VideoAnnotationsController::index() — Method in class VideoAnnotationsController: Show video annotations of a label.
FilterImageAnnotationsByLabelController::index() — Method in class FilterImageAnnotationsByLabelController: Show all image annotations of the project that have a specific label attached.
FilterVideoAnnotationsByLabelController::index() — Method in class FilterVideoAnnotationsByLabelController: Show all video annotations of the project that have a specific label attached.
SortAnnotationsByOutliersController::index() — Method in class SortAnnotationsByOutliersController: Sort annotations with specific label by outliers.
SortAnnotationsBySimilarityController::index() — Method in class SortAnnotationsBySimilarityController: Sort annotations with specific label by similarity.
FilterImageAnnotationsByLabelController::index() — Method in class FilterImageAnnotationsByLabelController: Show all image annotations of the volume that have a specific label attached.
FilterVideoAnnotationsByLabelController::index() — Method in class FilterVideoAnnotationsByLabelController: Show all video annotations of the volume that have a specific label attached.
ImageAnnotationExamplesController — Class in namespace Biigle\Modules\Largo\Http\Controllers\Api\Volumes
ImageAnnotationExamplesController::index() — Method in class ImageAnnotationExamplesController: Show example image annotations of a label or of a similar label if no annotation exists.
SortAnnotationsByOutliersController::index() — Method in class SortAnnotationsByOutliersController: Sort annotations with specific label by outliers.
SortAnnotationsBySimilarityController::index() — Method in class SortAnnotationsBySimilarityController: Sort annotations with specific label by similarity.
LargoController::index() — Method in class LargoController: Show the Largo view for a project.
LargoController::index() — Method in class LargoController: Show the the Largo view for a volume.
IndexProjectAnnotationsSimilarity — Class in namespace Biigle\Modules\Largo\Http\Requests
IndexVolumeAnnotationsSimilarity — Class in namespace Biigle\Modules\Largo\Http\Requests
StoreLargoSession::imageAnotationsBelongToVolumes() — Method in class StoreLargoSession: Check if all given image annotations belong to the given volumes.
ImageAnnotationLabelFeatureVector — Class in namespace Biigle\Modules\Largo
$ ApplyLargoSession#id — Property in class ApplyLargoSession: The job ID.
ApplyLargoSession::ignoreDeletedLabels() — Method in class ApplyLargoSession: Removes changes to annotations that should get a new label which no longer exists.
ApplyLargoSession::ignoreNullChanges() — Method in class ApplyLargoSession: Removes changes to annotations where the same label was dismissed than should be attached again later.
InitializeFeatureVectorChunk — Class in namespace Biigle\Modules\Largo\Jobs
ImagesCleanupListener — Class in namespace Biigle\Modules\Largo\Listeners
ImageAnnotationObserver — Class in namespace Biigle\Modules\Largo\Observers
ImagesController — Class in namespace Biigle\Modules\Laserpoints\Http\Controllers\Api
VolumeImageController::index() — Method in class VolumeImageController: List the IDs of images having automatically detected laser points.
$ ComputeImage#image — Property in class ComputeImage: The image that should be processed with laser point detection.
Image — Class in namespace Biigle\Modules\Laserpoints: Extends the base Biigle image.
$ Image#infoParams — Property in class Image: Properties of the laser points object.
$ ProcessDelphiJob#image — Property in class ProcessDelphiJob: The image to process.
$ ProcessImageDelphiJob#image — Property in class ProcessImageDelphiJob: The image to compute the area for.
$ ProcessImageManualJob#image — Property in class ProcessImageManualJob: The image to compute the area for.
$ ProcessManualJob#image — Property in class ProcessManualJob: The image to process.
ImageEmbeddingController — Class in namespace Biigle\Modules\MagicSam\Http\Controllers
$ GenerateEmbedding#image — Property in class GenerateEmbedding: The image to generate an embedding of.
$ GenericImage#id — Property in class GenericImage: The image ID.
AnnotationCandidateController::index() — Method in class AnnotationCandidateController: Get all annotation candidates of a MAIA job.
AnnotationCandidateController::indexSimilar() — Method in class AnnotationCandidateController: Get annotation candidates ordered by similarity to a specific proposal.
AreaKnowledgeTransferVolumeController::index() — Method in class AreaKnowledgeTransferVolumeController: List all volumes that can be accessed and used for knowledge transfer (using image area).
KnowledgeTransferVolumeController::index() — Method in class KnowledgeTransferVolumeController: List all volumes that can be accessed and used for knowledge transfer.
MaiaJobImagesController::indexTrainingProposals() — Method in class MaiaJobImagesController: Get training proposal coordinates for an image.
MaiaJobImagesController::indexAnnotationCandidates() — Method in class MaiaJobImagesController: Get annotationcandidate coordinates for an image.
TrainingProposalController::index() — Method in class TrainingProposalController: Get all training proposals of a MAIA job.
TrainingProposalController::indexSimilar() — Method in class TrainingProposalController: Get training proposals ordered by similarity to a specific proposal.
MaiaJobController::index() — Method in class MaiaJobController: Show the overview of MAIA jobs for a volume
DetectionJob::insertAnnotationChunk() — Method in class DetectionJob: Insert one chunk of the MAIA annotations that should be created into the database.
GenerateAnnotationCandidateFeatureVectors::insertFeatureVectorModelChunk() — Method in class GenerateAnnotationCandidateFeatureVectors: Insert a chunk of new feature vector models.
GenerateAnnotationFeatureVectors::insertFeatureVectorModelChunk() — Method in class GenerateAnnotationFeatureVectors: Insert a chunk of new feature vector models.
GenerateTrainingProposalFeatureVectors::insertFeatureVectorModelChunk() — Method in class GenerateTrainingProposalFeatureVectors: Insert a chunk of new feature vector models.
NoveltyDetection::insertAnnotationChunk() — Method in class NoveltyDetection: Insert one chunk of the MAIA annotations that should be created into the database.
ObjectDetection::insertAnnotationChunk() — Method in class ObjectDetection: Insert one chunk of the MAIA annotations that should be created into the database.
MaiaAnnotation::image() — Method in class MaiaAnnotation: The image, this MAIA annotation belongs to.
MaiaJob::isRunning() — Method in class MaiaJob: Determine if the job is currently running novelty detection or object detection.
Converter::ifdoToBiigleAnnotation() — Method in class Converter
Converter::ifdoLabelsToBiigleLabelAndUsers() — Method in class Converter
Converter::ifdoLabelToBiigleLabelAndUser() — Method in class Converter
Converter::ifdoShapeToBiigleShape() — Method in class Converter
Converter::ifdoParseCoordinates() — Method in class Converter
IfdoParser — Class in namespace Biigle\Modules\MetadataIfdo
$ IfdoParser#ifdo — Property in class IfdoParser
AdminController::index() — Method in class AdminController: Shows the list of subscribers page.
NewsletterArchiveController::index() — Method in class NewsletterArchiveController: Shows the sign up page.
NewsletterController::index() — Method in class NewsletterController: Shows the sign up page.
SearchControllerMixin::index() — Method in class SearchControllerMixin: Add report results to the search view.
ReportsController::index() — Method in class ReportsController: Show the reports list of the user.
StoreReport::isType() — Method in class StoreReport: Check if the requested reporty type ID is in the supplied array.
StoreReport::isAllowedForExportArea() — Method in class StoreReport: Check if export_area may be configured for the requested report type.
StoreReport::isAllowedForAggregateChildLabels() — Method in class StoreReport: Check if aggregate_child_labels may be configured for the requested report type.
StoreReport::isAllowedForStripIfdo() — Method in class StoreReport: Check if strip_ifdo may be configured for the requested report type.
AnnotationReportGenerator::isRestrictedToExportArea() — Method in class AnnotationReportGenerator: Should this report be restricted to the export area?
ImageLocationReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Projects\ImageAnnotations
ImageIfdoReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Projects
ImageLocationReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Projects\ImageLabels
ProjectReportGenerator::isRestrictedToNewestLabel() — Method in class ProjectReportGenerator: Determines if this report should take only the newest label for each annotation.
CsvReportGenerator::isRestrictedToNewestLabel() — Method in class CsvReportGenerator: Determines if this report should take only the newest label for each annotation.
ReportGenerator::isRestrictedToLabels() — Method in class ReportGenerator: Determines if this report is restricted to a subset of labels.
IfdoReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Volumes
$ IfdoReportGenerator#imageAnnotationLabels — Property in class IfdoReportGenerator: All labels that should be contained in the iFDO.
$ IfdoReportGenerator#imageAnnotationCreators — Property in class IfdoReportGenerator: All users that should be contained in the iFDO.
$ IfdoReportGenerator#imageSetItems — Property in class IfdoReportGenerator: iFDO image-annotation arrays for each image of the volume.
IfdoReportGenerator::isArrayItem() — Method in class IfdoReportGenerator: Determine if an iFDO item is a single object or an array of objects.
AnnotationReportGenerator::initQuery() — Method in class AnnotationReportGenerator: Assembles the part of the DB query that is the same for all annotation reports.
$ AreaReportGenerator#images — Property in class AreaReportGenerator: All images that contain annotations which are included in this report.
ImageLocationReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Volumes\ImageAnnotations
ImageIfdoReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Volumes
ImageLocationReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Volumes\ImageLabels
CsvReportGenerator::initQuery() — Method in class CsvReportGenerator: Assembles the part of the DB query that is the same for all annotation reports.
VolumeReportGenerator::isRestrictedToAnnotationSession() — Method in class VolumeReportGenerator: Should this report be restricted an annotation session?
VolumeReportGenerator::isRestrictedToNewestLabel() — Method in class VolumeReportGenerator: Determines if this report should take only the newest label of each annotation.
RestrictsToExportArea::isRestrictedToExportArea() — Method in class RestrictsToExportArea: Should this report be restricted to the export area?
Controller::isAllowed() — Method in class Controller: Determine if this kind of export is allowed by the config.
LabelTreeExportController::isAllowed() — Method in class LabelTreeExportController: Determine if this kind of export is allowed by the config.
UserExportController::isAllowed() — Method in class UserExportController: Determine if this kind of export is allowed by the config.
VolumeExportController::isAllowed() — Method in class VolumeExportController: Determine if this kind of export is allowed by the config.
ImportController — Class in namespace Biigle\Modules\Sync\Http\Controllers\Api\Import
ExportAdminController::index() — Method in class ExportAdminController: Shows the export admin page.
ImportAdminController — Class in namespace Biigle\Modules\Sync\Http\Controllers\Views
ImportAdminController::index() — Method in class ImportAdminController: Shows the import admin page.
PublicLabelTreeImportController::index() — Method in class PublicLabelTreeImportController: Shows the import admin page.
$ PostprocessVolumeImport#ids — Property in class PostprocessVolumeImport: IDs of the imported volumes.
$ Export#ids — Property in class Export: IDs of the models of this export.
ImageAnnotationExport — Class in namespace Biigle\Modules\Sync\Support\Export
ImageAnnotationLabelExport — Class in namespace Biigle\Modules\Sync\Support\Export
ImageExport — Class in namespace Biigle\Modules\Sync\Support\Export
ImageLabelExport — Class in namespace Biigle\Modules\Sync\Support\Export
$ ArchiveManager#importTypes — Property in class ArchiveManager: Class names of available imports.
Import — Class in namespace Biigle\Modules\Sync\Support\Import
$ LabelTreeImport#importLabelTrees — Property in class LabelTreeImport: Caches the decoded label tree import file.
LabelTreeImport::insertLabelTrees() — Method in class LabelTreeImport: Insert label trees that should be imported in the database.
LabelTreeImport::insertLabelTreeVersions() — Method in class LabelTreeImport: Create label tree versions for imported versioned label trees.
LabelTreeImport::insertLabels() — Method in class LabelTreeImport: Insert labels that should be imported in the database.
$ PublicLabelTreeImport#importLabelTree — Property in class PublicLabelTreeImport: Caches the decoded label tree import file.
PublicLabelTreeImport::importLabels() — Method in class PublicLabelTreeImport: Import the labels of this import.
$ UserImport#importUsers — Property in class UserImport: Caches the decoded user import file.
$ VolumeImport#importVolumes — Property in class VolumeImport: Caches the decoded volume import file.
VolumeImport::insertVolumes() — Method in class VolumeImport: Insert import volumes into the database.
VolumeImport::insertUsers() — Method in class VolumeImport: Insert import users into the database.
VolumeImport::insertLabelTreesAndLabels() — Method in class VolumeImport: Insert import label trees and labels into the database.
VolumeImport::insertFiles() — Method in class VolumeImport: Insert import files into the database.
VolumeImport::insertImages() — Method in class VolumeImport: Insert import images into the database.
VolumeImport::insertVideos() — Method in class VolumeImport: Insert import videos into the database.
VolumeImport::insertImageLabels() — Method in class VolumeImport: Insert import image labels into the database.
VolumeImport::insertVideoLabels() — Method in class VolumeImport: Insert import video labels into the database.
VolumeImport::insertImageAnnotations() — Method in class VolumeImport: Insert import image annotations into the database.
VolumeImport::insertVideoAnnotations() — Method in class VolumeImport: Insert import video annotations into the database.
UserDiskController::index() — Method in class UserDiskController: Shows the user disks settings.
UserDisk::isAboutToExpire() — Method in class UserDisk: Check whether the disk is about to expire.
StorageRequestController::index() — Method in class StorageRequestController: Show the view to index storage requests of the user.
StoreStorageRequestFile::isChunked() — Method in class StoreStorageRequestFile: Determine if the file is a chunked upload.
InAppNotification — Class in namespace Biigle\Notifications: A notification that is displayed through the in-app notification system.
ImageObserver — Class in namespace Biigle\Observers
UserPolicy::index() — Method in class UserPolicy: Determine if the given user can see other users.
Project::invitations() — Method in class Project: The project invitations of this project.
Project::imageVolumes() — Method in class Project: The image volumes of this project.
ProjectInvitation::isOpen() — Method in class ProjectInvitation: Check if the invitation is still open.
ImageMetadata — Class in namespace Biigle\Rules
VolumeUrl::isDeniedProvider() — Method in class VolumeUrl: Determine if the new remote volume URL is from a denied provider.
FileMetadata::isEmpty() — Method in class FileMetadata
ImageAnnotation — Class in namespace Biigle\Services\MetadataParsing
ImageCsvParser — Class in namespace Biigle\Services\MetadataParsing
ImageMetadata — Class in namespace Biigle\Services\MetadataParsing
ImageMetadata::isEmpty() — Method in class ImageMetadata: Determines if any metadata field other than the name is filled.
VideoMetadata::isEmpty() — Method in class VideoMetadata: Determines if any metadata field other than the name is filled.
VolumeMetadata::isEmpty() — Method in class VolumeMetadata: Determine if there is any file metadata.
VideoAnnotation::interpolatePoints() — Method in class VideoAnnotation: Get the interpolated points at a specific point of time.
VideoAnnotation::interpolateBetweenFrames() — Method in class VideoAnnotation: Get the interpolated points of this annotation between the specified frames.
VideoAnnotation::interpolateNaive() — Method in class VideoAnnotation: Interpolate between two points arrays.
VideoAnnotation::interpolationPointsToRectangle() — Method in class VideoAnnotation: Convert points that can be interpolated back to the points of a rectangle (frame).
Volume::images() — Method in class Volume: The images belonging to this volume.
Volume::isRemote() — Method in class Volume: Check if the images of this volume come from a remote URL.
Volume::isImageVolume() — Method in class Volume: Specifies whether the volume is an image volume.
Volume::isVideoVolume() — Method in class Volume: Specifies whether the volume is a video volume.
$ VolumeFile#id — Property in class VolumeFile
$ VolumeFileLabel#id — Property in class VolumeFileLabel
InitializeMaiaTables — Class in namespace [Global Namespace]

J

UserChannel::join() — Method in class UserChannel: Authenticate the user's access to the channel.
ProjectInvitationController::join() — Method in class ProjectInvitationController: Join a project through an invitation.
JoinProjectInvitation — Class in namespace Biigle\Http\Requests
$ Ifdo#jsonArr — Property in class Ifdo
Job — Class in namespace Biigle\Jobs
Job — Class in namespace Biigle\Modules\Laserpoints\Jobs
$ MaiaJobContinued#job — Property in class MaiaJobContinued: The job that caused this event.
$ MaiaJobCreated#job — Property in class MaiaJobCreated: The job that caused this event.
$ MaiaJobDeleting#job — Property in class MaiaJobDeleting: The job that caused this event.
$ ContinueMaiaJob#job — Property in class ContinueMaiaJob: The job to update
$ DestroyMaiaJob#job — Property in class DestroyMaiaJob: The job to destroy
$ SubmitAnnotationCandidates#job — Property in class SubmitAnnotationCandidates: The job to submit candidates of
$ ConvertAnnotationCandidates#job — Property in class ConvertAnnotationCandidates: The job to convert candidates of.
JobFailure — Class in namespace Biigle\Modules\Maia\Jobs: This job is executed on the machine running BIIGLE to store the error state of a failed novelty detection or object detection.
$ JobFailure#jobId — Property in class JobFailure: ID of the MAIA job.
MaiaAnnotation::job() — Method in class MaiaAnnotation: The MAIA job, this MAIA anotation belongs to.
JobStateChanged — Class in namespace Biigle\Modules\Maia\Notifications
$ JobStateChanged#job — Property in class JobStateChanged: The job which changed state.
Label::jsonSerialize() — Method in class Label
User::jsonSerialize() — Method in class User

K

Kernel — Class in namespace Biigle\Console
Kernel — Class in namespace Biigle\Http
$ LsloginId#keyType — Property in class LsloginId: The data type of the auto-incrementing ID.
KpiController — Class in namespace Biigle\Modules\Kpis\Http\Controllers\Views
KpisServiceProvider — Class in namespace Biigle\Modules\Kpis
KnowledgeTransferVolumeController — Class in namespace Biigle\Modules\Maia\Http\Controllers\Api
$ ObjectDetection#knowledgeTransferVolumeUrl — Property in class ObjectDetection: URL of the volume for knowledge transfer (if any).
$ ObjectDetection#knowledgeTransferImages — Property in class ObjectDetection: Filenames of the images of the knowledge transfer volume, indexed by their IDs.
KnowledgeTransferVolume — Class in namespace Biigle\Modules\Maia\Rules

L

Annotation::labels() — Method in class Annotation: The labels, this annotation got assigned by the users.
$ AnnotationLabel#label_id — Property in class AnnotationLabel
AnnotationLabel::label() — Method in class AnnotationLabel: The label, this annotation label belongs to.
LabelSourceAdapterContract — Class in namespace Biigle\Contracts: A label source adapter.
LabelController — Class in namespace Biigle\Http\Controllers\Api
LabelSourceController — Class in namespace Biigle\Http\Controllers\Api
LabelTreeAuthorizedProjectController — Class in namespace Biigle\Http\Controllers\Api
LabelTreeController — Class in namespace Biigle\Http\Controllers\Api
LabelTreeLabelController — Class in namespace Biigle\Http\Controllers\Api
LabelTreeMergeController — Class in namespace Biigle\Http\Controllers\Api
LabelTreeUserController — Class in namespace Biigle\Http\Controllers\Api
LabelTreeVersionController — Class in namespace Biigle\Http\Controllers\Api
LinkVideoAnnotationController — Class in namespace Biigle\Http\Controllers\Api
LoginController — Class in namespace Biigle\Http\Controllers\Auth
LabelTreesController — Class in namespace Biigle\Http\Controllers\Views\Admin
LogsController — Class in namespace Biigle\Http\Controllers\Views\Admin
LabelTreeMembersController — Class in namespace Biigle\Http\Controllers\Views\LabelTrees
LabelTreeMergeController — Class in namespace Biigle\Http\Controllers\Views\LabelTrees
LabelTreeProjectsController — Class in namespace Biigle\Http\Controllers\Views\LabelTrees
LabelTreeVersionsController — Class in namespace Biigle\Http\Controllers\Views\LabelTrees
LabelTreesController — Class in namespace Biigle\Http\Controllers\Views\LabelTrees
$ DestroyLabel#label — Property in class DestroyLabel: The label to destroy.
LinkVideoAnnotation — Class in namespace Biigle\Http\Requests
$ StoreImageAnnotationLabel#label — Property in class StoreImageAnnotationLabel: The label that should be attached.
$ StoreImageAnnotations#labels — Property in class StoreImageAnnotations: The labels that should be attached to the new annotations.
$ StoreVideoAnnotationLabel#label — Property in class StoreVideoAnnotationLabel: The label that should be attached.
$ StoreVolumeFileLabel#label — Property in class StoreVolumeFileLabel: The label that should be attached to the file.
$ UpdateLabel#label — Property in class UpdateLabel: The label to update.
Image::labels() — Method in class Image: The labels, this image got attached by the users.
ImageAnnotation::labels() — Method in class ImageAnnotation: The labels, this annotation got assigned by the users.
Label — Class in namespace Biigle: Annotations on an image can have multiple labels. A label is e.g. the type of the object visible in the region of the annotation. So if you put a circle annotation around a rock, you would label the annotation with rock.
LabelSource — Class in namespace Biigle: The source (database) of a label.
LabelTree — Class in namespace Biigle: A label tree is a group of labels. Projects can choose to used different label trees, which are then offered for labeling things in the project.
LabelTree::labels() — Method in class LabelTree: The labels that belong to this tree.
LabelTreeVersion — Class in namespace Biigle
LabelTreeVersion::labelTree() — Method in class LabelTreeVersion: The "master" label tree of this version.
LogManager — Class in namespace Biigle\Logging
LsloginIdFactory — Class in namespace Biigle\Modules\AuthLSLogin\Database\Factories
LSLoginController — Class in namespace Biigle\Modules\AuthLSLogin\Http\Controllers
LSLoginServiceProvider — Class in namespace Biigle\Modules\AuthLSLogin
LsloginId — Class in namespace Biigle\Modules\AuthLSLogin
LargoSessionFailed — Class in namespace Biigle\Modules\Largo\Events
LargoSessionSaved — Class in namespace Biigle\Modules\Largo\Events
LargoController — Class in namespace Biigle\Modules\Largo\Http\Controllers\Api\Projects
LargoController — Class in namespace Biigle\Modules\Largo\Http\Controllers\Api\Volumes
LargoController — Class in namespace Biigle\Modules\Largo\Http\Controllers\Views\Projects
LargoController — Class in namespace Biigle\Modules\Largo\Http\Controllers\Views\Volumes
LargoServiceProvider — Class in namespace Biigle\Modules\Largo
LaserpointsController — Class in namespace Biigle\Modules\Laserpoints\Http\Controllers\Api
$ Job#labelId — Property in class Job: ID of the laser point label.
LaserpointsServiceProvider — Class in namespace Biigle\Modules\Laserpoints
LaserpointsScript — Class in namespace Biigle\Modules\Laserpoints\Support
AnnotationCandidate::label() — Method in class AnnotationCandidate: The label that has been (maybe) attached to this candidate.
$ Converter#labels — Property in class Converter
Converter::labelForId() — Method in class Converter
$ ReportGenerator#labels — Property in class ReportGenerator: Cache for labels of all label trees that are used for this report.
$ IfdoReportGenerator#labels — Property in class IfdoReportGenerator: Labels that have been used in this volume.
$ PythonScriptRunner#lines — Property in class PythonScriptRunner: Array of output lines of the exec call.
LabelTreeExportController — Class in namespace Biigle\Modules\Sync\Http\Controllers\Api\Export
LabelTreeExport — Class in namespace Biigle\Modules\Sync\Support\Export
LabelTreeImport — Class in namespace Biigle\Modules\Sync\Support\Import
$ VolumeImport#labelTreeImport — Property in class VolumeImport: The label tree import instance that belongs to this import.
LabelPolicy — Class in namespace Biigle\Policies
LabelTreePolicy — Class in namespace Biigle\Policies
LabelTreeVersionPolicy — Class in namespace Biigle\Policies
Project::labelTrees() — Method in class Project: The label trees, this project is using.
$ EventServiceProvider#listen — Property in class EventServiceProvider: The event listener mappings for the application.
LessThan — Class in namespace Biigle\Rules
$ FileMetadata#labels — Property in class FileMetadata: The labels directly attached to the file.
Label — Class in namespace Biigle\Services\MetadataParsing
LabelAndUser — Class in namespace Biigle\Services\MetadataParsing
Shape::line() — Method in class Shape
Shape::lineId() — Method in class Shape
User::labelTrees() — Method in class User: The label trees, this user is a member of.
Video::labels() — Method in class Video: The labels, this video got attached by the users.
VideoAnnotation::labels() — Method in class VideoAnnotation: The labels, this annotation got assigned by the users.
VolumeFile::labels() — Method in class VolumeFile: The labels, this volume file got attached by the users.
$ VolumeFileLabel#label_id — Property in class VolumeFileLabel
VolumeFileLabel::label() — Method in class VolumeFileLabel: The label, this video label belongs to.

M

MigrateTiledImages — Class in namespace Biigle\Console\Commands
Modules — Class in namespace Biigle\Facades
FederatedSearchInstance::models() — Method in class FederatedSearchInstance: The models that belong to this instance.
FileCache::makeHttpClient() — Method in class FileCache: Create a new Guzzle HTTP client.
LinkVideoAnnotationController::mergeAnnotationLabels() — Method in class LinkVideoAnnotationController: Update annotation labels of the second annotation to point to the first annotation unless there already are equivalent annotation labels there.
MediaTypeController — Class in namespace Biigle\Http\Controllers\Api
MetadataController — Class in namespace Biigle\Http\Controllers\Api\Volumes
ManualController — Class in namespace Biigle\Http\Controllers\Views
$ Kernel#middleware — Property in class Kernel: The application's global HTTP middleware stack.
$ Kernel#middlewareGroups — Property in class Kernel: The application's route middleware groups.
$ Kernel#middlewareAliases — Property in class Kernel: The application's middleware aliases.
AttachProjectUser::messages() — Method in class AttachProjectUser: Get the error messages for the defined validation rules.
$ DestroyLabelTreeUser#member — Property in class DestroyLabelTreeUser: The label tree member to update.
StoreLabelTreeUser::messages() — Method in class StoreLabelTreeUser: Get the error messages for the defined validation rules.
StoreProjectInvitation::messages() — Method in class StoreProjectInvitation: Get the error messages for the defined validation rules.
$ StoreVolume#metadataParser — Property in class StoreVolume: Class name of the metadata parser that should be used.
$ StoreVolume#metadataPath — Property in class StoreVolume: Filled if an uploaded metadata text was stored in a file.
$ UpdateLabelTreeUser#member — Property in class UpdateLabelTreeUser: The label tree member to update.
UpdateLabelTreeUser::messages() — Method in class UpdateLabelTreeUser: Get the error messages for the defined validation rules.
UpdateProjectUser::messages() — Method in class UpdateProjectUser: Get the error messages for the defined validation rules.
$ CreateNewImagesOrVideos#metadata — Property in class CreateNewImagesOrVideos: Metadata of the files to add during creation.
MigrateTiledImage — Class in namespace Biigle\Jobs
ProcessNewImage::makeThumbnail() — Method in class ProcessNewImage: Makes a thumbnail for a single image.
TrackObject::maybeDeleteFile() — Method in class TrackObject: Delete a file if it exists.
LabelTree::memberCanLooseAdminStatus() — Method in class LabelTree: Check if a member can loose their admin status.
LabelTree::members() — Method in class LabelTree: The members of this label tree. Every member has a tree-specific role.
LabelTree::memberCanBeRemoved() — Method in class LabelTree: Determines if a member can be removed.
MediaType — Class in namespace Biigle: Volumes can contain either images or videos as media type.
$ AnnotationAssistanceRequestFactory#model — Property in class AnnotationAssistanceRequestFactory: The name of the factory's corresponding model.
$ LsloginIdFactory#model — Property in class LsloginIdFactory: The name of the factory's corresponding model.
StoreColorSortSequence::messages() — Method in class StoreColorSortSequence: Get the error messages for the defined validation rules.
MigratePatchStorage — Class in namespace Biigle\Modules\Largo\Console\Commands
$ ImageAnnotationLabelFeatureVectorFactory#model — Property in class ImageAnnotationLabelFeatureVectorFactory: The name of the factory's corresponding model.
$ VideoAnnotationLabelFeatureVectorFactory#model — Property in class VideoAnnotationLabelFeatureVectorFactory: The name of the factory's corresponding model.
GenerateFeatureVectors::makeBoxContained() — Method in class GenerateFeatureVectors: Adjust the position and size of the box so it is contained in a box with the given dimensions.
GenerateFeatureVectors::makeBoxIntegers() — Method in class GenerateFeatureVectors: Round and cast box values to int.
GenerateEmbedding::maybeDownloadCheckpoint() — Method in class GenerateEmbedding: Downloads the model checkpoint if they weren't downloaded yet.
MagicSamServiceProvider — Class in namespace Biigle\Modules\MagicSam
MigratePatchStorage — Class in namespace Biigle\Modules\Maia\Console\Commands
MigratePatchStorage::migrate() — Method in class MigratePatchStorage
$ AnnotationCandidateFactory#model — Property in class AnnotationCandidateFactory: The name of the factory's corresponding model.
$ AnnotationCandidateFeatureVectorFactory#model — Property in class AnnotationCandidateFeatureVectorFactory: The name of the factory's corresponding model.
MaiaJobFactory — Class in namespace Biigle\Modules\Maia\Database\Factories
$ MaiaJobFactory#model — Property in class MaiaJobFactory: The name of the factory's corresponding model.
MaiaJobStateFactory — Class in namespace Biigle\Modules\Maia\Database\Factories
$ MaiaJobStateFactory#model — Property in class MaiaJobStateFactory: The name of the factory's corresponding model.
$ TrainingProposalFactory#model — Property in class TrainingProposalFactory: The name of the factory's corresponding model.
$ TrainingProposalFeatureVectorFactory#model — Property in class TrainingProposalFeatureVectorFactory: The name of the factory's corresponding model.
MaiaJobContinued — Class in namespace Biigle\Modules\Maia\Events
MaiaJobCreated — Class in namespace Biigle\Modules\Maia\Events
MaiaJobDeleting — Class in namespace Biigle\Modules\Maia\Events
MaiaJobController — Class in namespace Biigle\Modules\Maia\Http\Controllers\Api
MaiaJobConvertingCandidatesController — Class in namespace Biigle\Modules\Maia\Http\Controllers\Api
MaiaJobImagesController — Class in namespace Biigle\Modules\Maia\Http\Controllers\Api
MaiaJobController — Class in namespace Biigle\Modules\Maia\Http\Controllers\Views
UpdateAnnotationCandidate::maybeValidatePoints() — Method in class UpdateAnnotationCandidate: Check if the points array is correct if it is present.
UpdateAnnotationCandidate::maybeRestrictUpdating() — Method in class UpdateAnnotationCandidate: Do not allow updating of candidate candidate if it already has been selected.
UpdateTrainingProposal::maybeValidatePoints() — Method in class UpdateTrainingProposal: Check if the points array is correct if it is present.
UpdateTrainingProposal::maybeRestrictUpdating() — Method in class UpdateTrainingProposal: Do not allow updating of training proposals if the MAIA job is running object detection or is finished.
$ JobFailure#message — Property in class JobFailure: Error message.
NoveltyDetection::maybeLimitAnnotations() — Method in class NoveltyDetection: Apply the limit for the maximum number of annotations.
ObjectDetection::maybeDownloadWeights() — Method in class ObjectDetection: Downloads the model pretrained weights if they weren't downloaded yet.
MaiaAnnotation — Class in namespace Biigle\Modules\Maia
MaiaJob — Class in namespace Biigle\Modules\Maia
MaiaJobState — Class in namespace Biigle\Modules\Maia
MaiaServiceProvider — Class in namespace Biigle\Modules\Maia
MaiaJobPolicy — Class in namespace Biigle\Modules\Maia\Policies
AreaKnowledgeTransferVolume::message() — Method in class AreaKnowledgeTransferVolume: Get the validation error message.
KnowledgeTransferVolume::message() — Method in class KnowledgeTransferVolume: Get the validation error message.
OddNumber::message() — Method in class OddNumber: Get the validation error message.
Converter::maybeCastToFloat() — Method in class Converter: Cast the value to float if it is not null or an empty string.
Converter::mediaType() — Method in class Converter
Converter::metadataClass() — Method in class Converter
MetadataIfdoServiceProvider — Class in namespace Biigle\Modules\MetadataIfdo
$ NewsletterFactory#model — Property in class NewsletterFactory: The name of the factory's corresponding model.
$ NewsletterSubscriberFactory#model — Property in class NewsletterSubscriberFactory: The name of the factory's corresponding model.
$ ReportFactory#model — Property in class ReportFactory: The name of the factory's corresponding model.
$ ReportTypeFactory#model — Property in class ReportTypeFactory: The name of the factory's corresponding model.
File::makeTmp() — Method in class File: Creates a new temporary file.
MakesZipArchives — Class in namespace Biigle\Modules\Reports\Support\Reports
MakesZipArchives::makeZip() — Method in class MakesZipArchives: Create a ZIP archive as a report.
IfdoReportGenerator::mergeImageSetItem() — Method in class IfdoReportGenerator: Merge an image-set-items item of the original iFDO with the item generated by this report.
LabelTreeImport::mergeLabels() — Method in class LabelTreeImport: Merge conflicts between import labels and existing labels.
$ UserDiskFactory#model — Property in class UserDiskFactory: The name of the factory's corresponding model.
$ StorageRequestFactory#model — Property in class StorageRequestFactory: The name of the factory's corresponding model.
$ StorageRequestFileFactory#model — Property in class StorageRequestFileFactory: The name of the factory's corresponding model.
FilePrefix::message() — Method in class FilePrefix: Get the validation error message.
$ InAppNotification#message — Property in class InAppNotification: Message (body) of the notification.
GreaterThan::message() — Method in class GreaterThan: Get the validation error message.
Handle::message() — Method in class Handle: Get the validation error message.
$ ImageMetadata#message — Property in class ImageMetadata: The validation error message.
ImageMetadata::message() — Method in class ImageMetadata: Get the validation error message.
LessThan::message() — Method in class LessThan: Get the validation error message.
Uuid4::message() — Method in class Uuid4: Get the validation error message.
VideoMetadata::message() — Method in class VideoMetadata: Get the validation error message.
VolumeFileUnique::message() — Method in class VolumeFileUnique: Get the validation error message.
$ VolumeFiles#message — Property in class VolumeFiles: The validation message to display.
VolumeFiles::message() — Method in class VolumeFiles: Get the validation error message.
$ VolumeUrl#message — Property in class VolumeUrl: The validation message to display.
VolumeUrl::message() — Method in class VolumeUrl: Get the validation error message.
CsvParser::maybeCastToFloat() — Method in class CsvParser: Cast the value to float if it is not null or an empty string.
MetadataParser — Class in namespace Biigle\Services\MetadataParsing
Modules — Class in namespace Biigle\Services: The module registry service.
$ HasMetadataFile#metadataFileDisk — Property in class HasMetadataFile: Name of the storage disk where the metadata files are stored.
Volume::mediaType() — Method in class Volume: The media type of this volume.

N

$ Apidoc#name — Property in class Apidoc: The console command name.
NewUser — Class in namespace Biigle\Console\Commands
$ NewUser#name — Property in class NewUser: The console command name.
NotificationController — Class in namespace Biigle\Http\Controllers\Api
UsersController::newUser() — Method in class UsersController: Shows the admin new user page.
NotificationsController — Class in namespace Biigle\Http\Controllers\Views\Notifications
SettingsController::notifications() — Method in class SettingsController: Shows the notification settings.
AnnotationAssistanceRequest::newFactory() — Method in class AnnotationAssistanceRequest: Create a new factory instance for the model.
$ Publish#name — Property in class Publish: The console command name.
LsloginId::newFactory() — Method in class LsloginId: Create a new factory instance for the model.
$ Publish#name — Property in class Publish: The console command name.
$ Config#name — Property in class Config: The console command name.
$ Publish#name — Property in class Publish: The console command name.
$ CountUniqueUser#name — Property in class CountUniqueUser: The console command name.
$ CountUser#name — Property in class CountUser: The console command name.
$ DetermineStorageUsage#name — Property in class DetermineStorageUsage: The console command name.
$ Config#name — Property in class Config: The console command name.
$ Publish#name — Property in class Publish: The console command name.
ImageAnnotationLabelFeatureVector::newFactory() — Method in class ImageAnnotationLabelFeatureVector: Create a new factory instance for the model.
VideoAnnotationLabelFeatureVector::newFactory() — Method in class VideoAnnotationLabelFeatureVector: Create a new factory instance for the model.
$ Config#name — Property in class Config: The console command name.
$ Publish#name — Property in class Publish: The console command name.
$ PruneOldEmbeddings#name — Property in class PruneOldEmbeddings: The console command name.
AnnotationCandidate::newFactory() — Method in class AnnotationCandidate: Create a new factory instance for the model.
AnnotationCandidateFeatureVector::newFactory() — Method in class AnnotationCandidateFeatureVector: Create a new factory instance for the model.
$ Publish#name — Property in class Publish: The console command name.
$ ConvertAnnotationCandidates#newAnnotations — Property in class ConvertAnnotationCandidates: Newly created annotations.
NotifyNoveltyDetectionComplete — Class in namespace Biigle\Modules\Maia\Jobs
NotifyObjectDetectionComplete — Class in namespace Biigle\Modules\Maia\Jobs
NoveltyDetection — Class in namespace Biigle\Modules\Maia\Jobs
NoveltyDetectionFailure — Class in namespace Biigle\Modules\Maia\Jobs
MaiaJob::newFactory() — Method in class MaiaJob: Create a new factory instance for the model.
MaiaJobState::newFactory() — Method in class MaiaJobState: Create a new factory instance for the model.
NoveltyDetectionComplete — Class in namespace Biigle\Modules\Maia\Notifications
NoveltyDetectionFailed — Class in namespace Biigle\Modules\Maia\Notifications
TrainingProposal::newFactory() — Method in class TrainingProposal: Create a new factory instance for the model.
TrainingProposalFeatureVector::newFactory() — Method in class TrainingProposalFeatureVector: Create a new factory instance for the model.
$ PruneStaleSubscribers#name — Property in class PruneStaleSubscribers: The console command name.
NewsletterFactory — Class in namespace Biigle\Modules\Newsletter\Database\Factories
NewsletterSubscriberFactory — Class in namespace Biigle\Modules\Newsletter\Database\Factories
NewsletterController — Class in namespace Biigle\Modules\Newsletter\Http\Controllers\Api
NewsletterSubscriberController — Class in namespace Biigle\Modules\Newsletter\Http\Controllers\Api
NewsletterArchiveController — Class in namespace Biigle\Modules\Newsletter\Http\Controllers\Views
NewsletterController — Class in namespace Biigle\Modules\Newsletter\Http\Controllers\Views
$ UpdateNewsletter#newsletter — Property in class UpdateNewsletter
Newsletter — Class in namespace Biigle\Modules\Newsletter
Newsletter::newFactory() — Method in class Newsletter: Create a new factory instance for the model.
NewsletterServiceProvider — Class in namespace Biigle\Modules\Newsletter
NewsletterSubscriber — Class in namespace Biigle\Modules\Newsletter
NewsletterSubscriber::newFactory() — Method in class NewsletterSubscriber: Create a new factory instance for the model.
NewNewsletter — Class in namespace Biigle\Modules\Newsletter\Notifications
$ NewNewsletter#newsletter — Property in class NewNewsletter
NewsletterPolicy — Class in namespace Biigle\Modules\Newsletter\Policies
NewsletterSubscriberPolicy — Class in namespace Biigle\Modules\Newsletter\Policies
$ Publish#name — Property in class Publish: The console command name.
Report::newFactory() — Method in class Report: Create a new factory instance for the model.
ReportType::newFactory() — Method in class ReportType: Create a new factory instance for the model.
$ AbundanceReportGenerator#name — Property in class AbundanceReportGenerator: Name of the report for use in text.
$ AnnotationLocationReportGenerator#name — Property in class AnnotationLocationReportGenerator: Name of the report for use in text.
$ AreaReportGenerator#name — Property in class AreaReportGenerator: Name of the report for use in text.
$ BasicReportGenerator#name — Property in class BasicReportGenerator: Name of the report for use in text.
$ CocoReportGenerator#name — Property in class CocoReportGenerator: Name of the report for use in text.
$ CsvReportGenerator#name — Property in class CsvReportGenerator: Name of the report for use in text.
$ ExtendedReportGenerator#name — Property in class ExtendedReportGenerator: Name of the report for use in text.
$ FullReportGenerator#name — Property in class FullReportGenerator: Name of the report for use in text.
$ ImageLocationReportGenerator#name — Property in class ImageLocationReportGenerator: Name of the report for use in text.
$ ImageIfdoReportGenerator#name — Property in class ImageIfdoReportGenerator: Name of the report for use in text.
$ BasicReportGenerator#name — Property in class BasicReportGenerator: Name of the report for use in text.
$ CsvReportGenerator#name — Property in class CsvReportGenerator: Name of the report for use in text.
$ ImageLocationReportGenerator#name — Property in class ImageLocationReportGenerator: Name of the report for use in text.
$ CsvReportGenerator#name — Property in class CsvReportGenerator: Name of the report for use in text.
$ VideoIfdoReportGenerator#name — Property in class VideoIfdoReportGenerator: Name of the report for use in text.
$ CsvReportGenerator#name — Property in class CsvReportGenerator: Name of the report for use in text.
$ ReportGenerator#name — Property in class ReportGenerator: Name of the report for use in text.
$ AbundanceReportGenerator#name — Property in class AbundanceReportGenerator: Name of the report for use in text.
$ AnnotationLocationReportGenerator#name — Property in class AnnotationLocationReportGenerator: Name of the report for use in text.
$ AreaReportGenerator#name — Property in class AreaReportGenerator: Name of the report for use in text.
$ BasicReportGenerator#name — Property in class BasicReportGenerator: Name of the report for use in text.
$ CocoReportGenerator#name — Property in class CocoReportGenerator: Name of the report for use in text.
$ CsvReportGenerator#name — Property in class CsvReportGenerator: Name of the report for use in text.
$ ExtendedReportGenerator#name — Property in class ExtendedReportGenerator: Name of the report for use in text.
$ FullReportGenerator#name — Property in class FullReportGenerator: Name of the report for use in text.
$ ImageLocationReportGenerator#name — Property in class ImageLocationReportGenerator: Name of the report for use in text.
$ ImageIfdoReportGenerator#name — Property in class ImageIfdoReportGenerator: Name of the report for use in text.
$ BasicReportGenerator#name — Property in class BasicReportGenerator: Name of the report for use in text.
$ CsvReportGenerator#name — Property in class CsvReportGenerator: Name of the report for use in text.
$ ImageLocationReportGenerator#name — Property in class ImageLocationReportGenerator: Name of the report for use in text.
$ CsvReportGenerator#name — Property in class CsvReportGenerator: Name of the report for use in text.
$ VideoIfdoReportGenerator#name — Property in class VideoIfdoReportGenerator: Name of the report for use in text.
$ CsvReportGenerator#name — Property in class CsvReportGenerator: Name of the report for use in text.
$ Prune#name — Property in class Prune: The console command name.
$ Publish#name — Property in class Publish: The console command name.
$ CheckExpiredUserDisks#name — Property in class CheckExpiredUserDisks: The console command name.
$ PruneExpiredUserDisks#name — Property in class PruneExpiredUserDisks: The console command name.
UserDisk::newFactory() — Method in class UserDisk: Create a new factory instance for the model.
$ CheckExpiredStorageRequests#name — Property in class CheckExpiredStorageRequests: The console command name.
$ PruneExpiredStorageRequests#name — Property in class PruneExpiredStorageRequests: The console command name.
$ PruneStaleStorageRequests#name — Property in class PruneStaleStorageRequests: The console command name.
StorageRequest::newFactory() — Method in class StorageRequest: Create a new factory instance for the model.
StorageRequestFile::newFactory() — Method in class StorageRequestFile: Create a new factory instance for the model.
$ RouteServiceProvider#namespace — Property in class RouteServiceProvider: The controller namespace for the application.

O

ApiToken::owner() — Method in class ApiToken: The user, this token belongs to.
ObjectTrackingFailed — Class in namespace Biigle\Events
ObjectTrackingSucceeded — Class in namespace Biigle\Events
$ CloneImagesOrVideos#onlyFiles — Property in class CloneImagesOrVideos: Array containing file ids.
$ CloneImagesOrVideos#onlyAnnotationLabels — Property in class CloneImagesOrVideos: Array containing annotation label ids.
$ CloneImagesOrVideos#onlyFileLabels — Property in class CloneImagesOrVideos: Array containing file label ids.
$ ProcessNewVolumeFiles#only — Property in class ProcessNewVolumeFiles: Array of image/video IDs to restrict processing to.
$ DelphiGather#outputPath — Property in class DelphiGather: Path to the temporary ouput file of the Delphi gather script.
ObjectDetection — Class in namespace Biigle\Modules\Maia\Jobs
ObjectDetectionFailure — Class in namespace Biigle\Modules\Maia\Jobs
ObjectDetectionComplete — Class in namespace Biigle\Modules\Maia\Notifications
ObjectDetectionFailed — Class in namespace Biigle\Modules\Maia\Notifications
OddNumber — Class in namespace Biigle\Modules\Maia\Rules
$ ReportGenerator#options — Property in class ReportGenerator: Options for this report.
UserDisksServiceProvider::overrideUseDiskGateAbility() — Method in class UserDisksServiceProvider: Add user disks logic to the 'use-disk' ability.
$ DeleteStorageRequestFile#oldRetryCount — Property in class DeleteStorageRequestFile: Count for retry attempts of a chunked file
Volume::orderedImages() — Method in class Volume: The images belonging to this volume ordered by filename (ascending).
Volume::orderedFiles() — Method in class Volume: The images belonging to this volume ordered by filename (ascending).

P

$ Annotation#points — Property in class Annotation
PruneNotifications — Class in namespace Biigle\Console\Commands
UpdateVideoMetadata::processVolume() — Method in class UpdateVideoMetadata
UpdateVideoMetadata::processLocalVideo() — Method in class UpdateVideoMetadata
UpdateVideoMetadata::processRemoteVideo() — Method in class UpdateVideoMetadata
Handler::prepareException() — Method in class Handler: Prepare exception for rendering.
PruneFileCache — Class in namespace Biigle\FileCache\Console\Commands
FileCache::prune() — Method in class FileCache: Remove cached files that are too old or exceed the maximum cache size.
FileCache::prune() — Method in class FileCache: Remove cached files that are too old or exceed the maximum cache size.
FileCacheServiceProvider::provides() — Method in class FileCacheServiceProvider: Get the services provided by the provider.
FileCacheFake::prune() — Method in class FileCacheFake: Remove cached files that are too old or exceed the maximum cache size.
PendingVolumeController — Class in namespace Biigle\Http\Controllers\Api
PendingVolumeImportController — Class in namespace Biigle\Http\Controllers\Api
ProjectController — Class in namespace Biigle\Http\Controllers\Api
ProjectInvitationController — Class in namespace Biigle\Http\Controllers\Api
ProjectLabelTreeController — Class in namespace Biigle\Http\Controllers\Api
ProjectUserController — Class in namespace Biigle\Http\Controllers\Api
ProjectVolumeController — Class in namespace Biigle\Http\Controllers\Api
ProjectsAttachableVolumesController — Class in namespace Biigle\Http\Controllers\Api
PrivacyController — Class in namespace Biigle\Http\Controllers\Views
ProjectInvitationController — Class in namespace Biigle\Http\Controllers\Views\Projects
ProjectLabelTreeController — Class in namespace Biigle\Http\Controllers\Views\Projects
ProjectStatisticsController — Class in namespace Biigle\Http\Controllers\Views\Projects
ProjectUserController — Class in namespace Biigle\Http\Controllers\Views\Projects
ProjectsController — Class in namespace Biigle\Http\Controllers\Views\Projects
SettingsController::profile() — Method in class SettingsController: Shows the profile settings.
PendingVolumeController — Class in namespace Biigle\Http\Controllers\Views\Volumes
PreventRequestsDuringMaintenance — Class in namespace Biigle\Http\Middleware
$ TrustProxies#proxies — Property in class TrustProxies: The trusted proxies for this application.
$ AttachProjectUser#project — Property in class AttachProjectUser: The project to attach a user to.
$ CloneVolume#project — Property in class CloneVolume: The project to update.
$ DestroyPinnedProject#project — Property in class DestroyPinnedProject: The project to unpin.
$ DestroyProjectUser#project — Property in class DestroyProjectUser: The project to detach the user from.
$ StoreLabelTree#project — Property in class StoreLabelTree: The project to which the new label tree should be attached (if any).
StorePendingVolume::prepareForValidation() — Method in class StorePendingVolume: Prepare the data for validation.
$ StorePinnedProject#project — Property in class StorePinnedProject: The project to pin.
$ StoreProjectInvitation#project — Property in class StoreProjectInvitation: The project to attach a user to.
$ StoreProjectLabelTree#project — Property in class StoreProjectLabelTree: The project to attach the label tree to.
StoreUser::prepareForValidation() — Method in class StoreUser: Prepare the data for validation.
$ StoreVolume#project — Property in class StoreVolume: The project to attach the new volume to.
StoreVolume::prepareForValidation() — Method in class StoreVolume: Prepare the data for validation.
StoreVolumeFile::prepareForValidation() — Method in class StoreVolumeFile: Prepare the data for validation.
UpdatePendingVolume::prepareForValidation() — Method in class UpdatePendingVolume: Prepare the data for validation.
$ UpdateProject#project — Property in class UpdateProject: The project to update.
$ UpdateProjectUser#project — Property in class UpdateProjectUser: The project to update the user in.
UpdateUser::prepareForValidation() — Method in class UpdateUser: Prepare the data for validation.
UpdateVolume::prepareForValidation() — Method in class UpdateVolume: Prepare the data for validation.
Ifdo::printErrors() — Method in class Ifdo
$ CloneImagesOrVideos#project — Property in class CloneImagesOrVideos: The target project.
ProcessNewImage — Class in namespace Biigle\Jobs
ProcessNewVideo — Class in namespace Biigle\Jobs
ProcessNewVolumeFiles — Class in namespace Biigle\Jobs
TrackObject::python() — Method in class TrackObject: Execute a Python script.
Label::parent() — Method in class Label: The parent label if the labels are ordered in a tree-like structure.
LabelTree::projects() — Method in class LabelTree: The projects that are using this label tree.
AnanasServiceProvider::provides() — Method in class AnanasServiceProvider: Get the services provided by the provider.
Publish — Class in namespace Biigle\Modules\Ananas\Console\Commands
StoreAnnotationAssistanceRequest::prepareForValidation() — Method in class StoreAnnotationAssistanceRequest: Prepare the data for validation.
ColorSortServiceProvider::provides() — Method in class ColorSortServiceProvider: Get the services provided by the provider.
Publish — Class in namespace Biigle\Modules\ColorSort\Console\Commands
DemoServiceProvider::provides() — Method in class DemoServiceProvider: Get the services provided by the provider.
Publish — Class in namespace Biigle\Modules\Geo\Console\Commands
GeoServiceProvider::provides() — Method in class GeoServiceProvider: Get the services provided by the provider.
ProjectImageAnnotationLabelController — Class in namespace Biigle\Modules\Geo\Http\Controllers\Api
ProjectController — Class in namespace Biigle\Modules\Geo\Http\Controllers\Views
InitializeFeatureVectors::processImages() — Method in class InitializeFeatureVectors
InitializeFeatureVectors::processVideos() — Method in class InitializeFeatureVectors
Publish — Class in namespace Biigle\Modules\Largo\Console\Commands
ProcessAnnotatedFileException — Class in namespace Biigle\Modules\Largo\Exceptions
$ IndexProjectAnnotationsSimilarity#project — Property in class IndexProjectAnnotationsSimilarity: The project of which to index the annotations.
$ StoreProjectLargoSession#project — Property in class StoreProjectLargoSession: The project to store the Largo session for.
GenerateFeatureVectors::python() — Method in class GenerateFeatureVectors: Run the Python command.
ProcessAnnotatedFile — Class in namespace Biigle\Modules\Largo\Jobs
ProcessAnnotatedImage — Class in namespace Biigle\Modules\Largo\Jobs
ProcessAnnotatedVideo — Class in namespace Biigle\Modules\Largo\Jobs
ProcessAnnotatedVideo::processAnnotationChunk() — Method in class ProcessAnnotatedVideo: Process a chunk of annotations of this job's file.
LargoServiceProvider::provides() — Method in class LargoServiceProvider: Get the services provided by the provider.
Publish — Class in namespace Biigle\Modules\Laserpoints\Console\Commands
ProcessDelphiJob — Class in namespace Biigle\Modules\Laserpoints\Jobs
ProcessImageDelphiJob — Class in namespace Biigle\Modules\Laserpoints\Jobs
ProcessImageManualJob — Class in namespace Biigle\Modules\Laserpoints\Jobs
ProcessManualJob — Class in namespace Biigle\Modules\Laserpoints\Jobs
$ ProcessManualJob#points — Property in class ProcessManualJob: Laser point coordinates for the image.
ProcessVolumeDelphiJob — Class in namespace Biigle\Modules\Laserpoints\Jobs
LaserpointsServiceProvider::provides() — Method in class LaserpointsServiceProvider: Get the services provided by the provider.
DelphiGather::python() — Method in class DelphiGather: Execute a python script.
PruneOldEmbeddings — Class in namespace Biigle\Modules\MagicSam\Console\Commands
GenerateEmbedding::python() — Method in class GenerateEmbedding: Execute a Python command.
Publish — Class in namespace Biigle\Modules\Maia\Console\Commands
PrepareKnowledgeTransferException — Class in namespace Biigle\Modules\Maia\Exceptions
$ UpdateTrainingProposal#proposal — Property in class UpdateTrainingProposal: The training proposal to update
ConvertAnnotationCandidates::processChunk() — Method in class ConvertAnnotationCandidates: Process a chunk of annotation candidates.
DetectionJob::python() — Method in class DetectionJob: Execute a Python command and return the path to a file containing the output.
DetectionJob::parseAnnotations() — Method in class DetectionJob: Parse the output JSON files to get the array of annotations for each image.
DetectionJob::parseAnnotationsFile() — Method in class DetectionJob: Parse the output JSON file of a single image.
ObjectDetection::performTraining() — Method in class ObjectDetection: Perform training of object detection model.
ObjectDetection::performInference() — Method in class ObjectDetection: Perform inference with the trained object detection model.
PrepareAnnotationsJob — Class in namespace Biigle\Modules\Maia\Jobs
PrepareExistingAnnotations — Class in namespace Biigle\Modules\Maia\Jobs
PrepareKnowledgeTransfer — Class in namespace Biigle\Modules\Maia\Jobs
ProcessNoveltyDetectedImage — Class in namespace Biigle\Modules\Maia\Jobs
ProcessObjectDetectedImage — Class in namespace Biigle\Modules\Maia\Jobs
PrepareDeleteAnnotationPatches — Class in namespace Biigle\Modules\Maia\Listeners
PruneTrainingProposalFeatureVectors — Class in namespace Biigle\Modules\Maia\Listeners
PruneTrainingProposalPatches — Class in namespace Biigle\Modules\Maia\Listeners
MaiaServiceProvider::provides() — Method in class MaiaServiceProvider: Get the services provided by the provider.
AreaKnowledgeTransferVolume::passes() — Method in class AreaKnowledgeTransferVolume: Determine if the validation rule passes.
KnowledgeTransferVolume::passes() — Method in class KnowledgeTransferVolume: Determine if the validation rule passes.
OddNumber::passes() — Method in class OddNumber: Determine if the validation rule passes.
Converter::parseHandle() — Method in class Converter
PruneStaleSubscribers — Class in namespace Biigle\Modules\Newsletter\Console\Commands
NewsletterController::publish() — Method in class NewsletterController: Publish a newsletter
DestroyNewsletterSubscriber::prepareForValidation() — Method in class DestroyNewsletterSubscriber: Prepare the data for validation.
StoreNewsletterSubscriber::prepareForValidation() — Method in class StoreNewsletterSubscriber: Prepare the data for validation.
NewsletterPolicy::publish() — Method in class NewsletterPolicy: Determine if the given user can publish a newsletter.
Publish — Class in namespace Biigle\Modules\Reports\Console\Commands
ProjectReportController — Class in namespace Biigle\Modules\Reports\Http\Controllers\Api\Projects
ProjectReportsController — Class in namespace Biigle\Modules\Reports\Http\Controllers\Views
$ StoreProjectReport#project — Property in class StoreProjectReport: The project to generate a new report for.
ProjectObserver — Class in namespace Biigle\Modules\Reports\Observers
$ ReportsServiceProvider#policies — Property in class ReportsServiceProvider: The policy mappings for the application.
ReportsServiceProvider::provides() — Method in class ReportsServiceProvider: Get the services provided by the provider.
CsvFile::put() — Method in class CsvFile: Append a new row to the CSV file.
$ File#path — Property in class File: File path.
File::put() — Method in class File: Add content to the file.
ProjectImageReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Projects
ProjectReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Projects
ProjectVideoReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Projects
IfdoReportGenerator::processFile() — Method in class IfdoReportGenerator: Create the image-set-item entry for an image or video.
AreaReportGenerator::parseRows() — Method in class AreaReportGenerator: Creates the array of annotations that is inserted into the CSV file.
ImageIfdoReportGenerator::processFile() — Method in class ImageIfdoReportGenerator: Create the image-set-item entry for an image.
PythonScriptRunner — Class in namespace Biigle\Modules\Reports\Support\Reports\Volumes
VideoIfdoReportGenerator::processFile() — Method in class VideoIfdoReportGenerator: Create the image-set-item entry for a video.
$ VolumeReportGenerator#pythonScriptRunner — Property in class VolumeReportGenerator: Object that runs the Python script to generate a report.
Prune — Class in namespace Biigle\Modules\Sync\Console\Commands
Publish — Class in namespace Biigle\Modules\Sync\Console\Commands
PublicLabelTreeExportController — Class in namespace Biigle\Modules\Sync\Http\Controllers\Api\Export
PublicLabelTreeImportController — Class in namespace Biigle\Modules\Sync\Http\Controllers\Api\Import
PublicLabelTreeImportController — Class in namespace Biigle\Modules\Sync\Http\Controllers\Views
PostprocessVolumeImport — Class in namespace Biigle\Modules\Sync\Jobs
PublicLabelExport — Class in namespace Biigle\Modules\Sync\Support\Export
PublicLabelTreeExport — Class in namespace Biigle\Modules\Sync\Support\Export
ArchiveManager::prune() — Method in class ArchiveManager: Delete uploaded import files that are older than one week.
$ Import#path — Property in class Import: Path to the directory with the import files.
LabelTreeImport::perform() — Method in class LabelTreeImport: Perform the import.
PublicLabelTreeImport — Class in namespace Biigle\Modules\Sync\Support\Import
PublicLabelTreeImport::perform() — Method in class PublicLabelTreeImport: Perform the import.
UserImport::perform() — Method in class UserImport: Perform the import.
VolumeImport::perform() — Method in class VolumeImport: Perform the import.
SyncServiceProvider::provides() — Method in class SyncServiceProvider: Get the services provided by the provider.
PruneExpiredUserDisks — Class in namespace Biigle\Modules\UserDisks\Console\Commands
UpdateUserDisk::prepareForValidation() — Method in class UpdateUserDisk: Prepare the data for validation.
PruneExpiredStorageRequests — Class in namespace Biigle\Modules\UserStorage\Console\Commands
PruneStaleStorageRequests — Class in namespace Biigle\Modules\UserStorage\Console\Commands
StoreStorageRequestFile::prepareForValidation() — Method in class StoreStorageRequestFile: Prepare the data for validation.
$ DeleteStorageRequestDirectory#path — Property in class DeleteStorageRequestDirectory: Directory path to be deleted.
$ DeleteStorageRequestDirectory#pending — Property in class DeleteStorageRequestDirectory: Whether the request of the file was pending or not.
$ DeleteStorageRequestFile#path — Property in class DeleteStorageRequestFile: Path of the file to be deleted.
$ DeleteStorageRequestFile#pending — Property in class DeleteStorageRequestFile: Whether the request of the file was pending or not.
$ DeleteStorageRequestFile#prefix — Property in class DeleteStorageRequestFile: Directory prefix of the storage request.
FilePrefix::passes() — Method in class FilePrefix: Determine if the validation rule passes.
$ ChunkedFileStreamPump#path — Property in class ChunkedFileStreamPump: Base path of the storage request file.
ProjectObserver — Class in namespace Biigle\Observers
PendingVolume — Class in namespace Biigle
PendingVolume::project() — Method in class PendingVolume
PendingVolumePolicy — Class in namespace Biigle\Policies
ProjectInvitationPolicy — Class in namespace Biigle\Policies
ProjectPolicy — Class in namespace Biigle\Policies
Project — Class in namespace Biigle
Project::pendingVolumes() — Method in class Project: The pending volumes of this project.
ProjectInvitation — Class in namespace Biigle
ProjectInvitation::project() — Method in class ProjectInvitation: The project to which this invitation belongs.
$ AuthServiceProvider#policies — Property in class AuthServiceProvider: The policy mappings for the application.
GreaterThan::passes() — Method in class GreaterThan: Determine if the validation rule passes.
Handle::passes() — Method in class Handle: Determine if the validation rule passes.
ImageMetadata::passes() — Method in class ImageMetadata: Determine if the validation rule passes.
LessThan::passes() — Method in class LessThan: Determine if the validation rule passes.
Uuid4::passes() — Method in class Uuid4: Determine if the validation rule passes.
VideoMetadata::passes() — Method in class VideoMetadata: Determine if the validation rule passes.
VolumeFileUnique::passes() — Method in class VolumeFileUnique: Check if the given filenames don't already exist in the volume.
VolumeFiles::passes() — Method in class VolumeFiles: Check if an array of image filenames is valid.
VolumeUrl::passes() — Method in class VolumeUrl: Determine if the validation rule passes.
VolumeUrl::passesRemoteUrl() — Method in class VolumeUrl: Validate a remote volume URL.
VolumeUrl::passesDiskUrl() — Method in class VolumeUrl: Validate a storage disk volume URL.
WormsAdapter::parseItem() — Method in class WormsAdapter: Parse a WoRMS item to the internal representation.
CsvParser::processFirstLine() — Method in class CsvParser
ParserFactory — Class in namespace Biigle\Services\MetadataParsing
$ ParserFactory#parsers